Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages
ABSTRACT: Background: Glycolytic inhibitor 2-deoxy-D-glucose (2-DG) binds to hexokinase in a non-competitive manner and phosphoglucose isomerase in a competitive manner, blocking the initial steps of the glycolytic pathway. Although 2-DG stimulates endoplasmic reticulum (ER) stress, activating the u...
- Autores:
-
Urcuqui Inchima, Silvio
Velilla Hernández, Paula Andrea
Tamayo Molina, Yordi Sebastián
Hernández Sarmiento, Lady Johana
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2023
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/35522
- Acceso en línea:
- https://hdl.handle.net/10495/35522
- Palabra clave:
- Desoxiglucosa
Deoxyglucose
Estrés del Retículo Endoplásmico
Endoplasmic Reticulum Stress
Respuesta de Proteína Desplegada
Unfolded Protein Response
Glicosilación
Glycosylation
Células
Cells
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-nd/2.5/co/
| id |
UDEA2_8744e982a8b10ac29d730478a8f63904 |
|---|---|
| oai_identifier_str |
oai:bibliotecadigital.udea.edu.co:10495/35522 |
| network_acronym_str |
UDEA2 |
| network_name_str |
Repositorio UdeA |
| repository_id_str |
|
| dc.title.spa.fl_str_mv |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| title |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| spellingShingle |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages Desoxiglucosa Deoxyglucose Estrés del Retículo Endoplásmico Endoplasmic Reticulum Stress Respuesta de Proteína Desplegada Unfolded Protein Response Glicosilación Glycosylation Células Cells |
| title_short |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| title_full |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| title_fullStr |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| title_full_unstemmed |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| title_sort |
Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages |
| dc.creator.fl_str_mv |
Urcuqui Inchima, Silvio Velilla Hernández, Paula Andrea Tamayo Molina, Yordi Sebastián Hernández Sarmiento, Lady Johana |
| dc.contributor.author.none.fl_str_mv |
Urcuqui Inchima, Silvio Velilla Hernández, Paula Andrea Tamayo Molina, Yordi Sebastián Hernández Sarmiento, Lady Johana |
| dc.contributor.researchgroup.spa.fl_str_mv |
Inmunovirología |
| dc.subject.decs.none.fl_str_mv |
Desoxiglucosa Deoxyglucose Estrés del Retículo Endoplásmico Endoplasmic Reticulum Stress Respuesta de Proteína Desplegada Unfolded Protein Response Glicosilación Glycosylation Células Cells |
| topic |
Desoxiglucosa Deoxyglucose Estrés del Retículo Endoplásmico Endoplasmic Reticulum Stress Respuesta de Proteína Desplegada Unfolded Protein Response Glicosilación Glycosylation Células Cells |
| description |
ABSTRACT: Background: Glycolytic inhibitor 2-deoxy-D-glucose (2-DG) binds to hexokinase in a non-competitive manner and phosphoglucose isomerase in a competitive manner, blocking the initial steps of the glycolytic pathway. Although 2-DG stimulates endoplasmic reticulum (ER) stress, activating the unfolded protein response to restore protein homeostasis, it is unclear which ER stress-related genes are modulated in response to 2-DG treatment in human primary cells. Here, we aimed to determine whether the treatment of monocytes and monocyte-derived macrophages (MDMs) with 2-DG leads to a transcriptional profile specific to ER stress. Methods: We performed bioinformatics analysis to identify differentially expressed genes (DEGs) in previously reported RNA-seq datasets of 2-DG treated cells. RT-qPCR was performed to verify the sequencing data on cultured MDMs. Results: A total of 95 common DEGs were found by transcriptional analysis of monocytes and MDMs treated with 2-DG. Among these, 74 were up-regulated and 21 were down-regulated. Multitranscript analysis showed that DEGs are linked to integrated stress response (GRP78/BiP, PERK, ATF4, CHOP, GADD34, IRE1α, XBP1, SESN2, ASNS, PHGDH), hexosamine biosynthetic pathway (GFAT1, GNA1, PGM3, UAP1), and mannose metabolism (GMPPA and GMPPB). Conclusions: Results reveal that 2-DG triggers a gene expression program that might be involved in restoring protein homeostasis in primary cells. General significance: 2-DG is known to inhibit glycolysis and induce ER stress; however, its effect on gene expression in primary cells is not well understood. This work shows that 2-DG is a stress inducer shifting the metabolic state of monocytes and macrophages |
| publishDate |
2023 |
| dc.date.accessioned.none.fl_str_mv |
2023-06-15T18:10:26Z |
| dc.date.available.none.fl_str_mv |
2023-06-15T18:10:26Z |
| dc.date.issued.none.fl_str_mv |
2023 |
| dc.type.spa.fl_str_mv |
Artículo de investigación |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/ART |
| dc.type.coarversion.spa.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| status_str |
publishedVersion |
| dc.identifier.citation.spa.fl_str_mv |
Tamayo-Molina YS, Velilla PA, Hernández-Sarmiento LJ, Urcuqui-Inchima S. Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages. Biochim Biophys Acta Gen Subj. 2023 Jun 7;1867(9):130397. doi: 10.1016/j.bbagen.2023.130397. Epub ahead of print. PMID: 37290716. |
| dc.identifier.issn.none.fl_str_mv |
0304-4165 |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/10495/35522 |
| dc.identifier.doi.none.fl_str_mv |
10.1016/j.bbagen.2023.130397 |
| dc.identifier.eissn.none.fl_str_mv |
1872-8006 |
| identifier_str_mv |
Tamayo-Molina YS, Velilla PA, Hernández-Sarmiento LJ, Urcuqui-Inchima S. Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages. Biochim Biophys Acta Gen Subj. 2023 Jun 7;1867(9):130397. doi: 10.1016/j.bbagen.2023.130397. Epub ahead of print. PMID: 37290716. 0304-4165 10.1016/j.bbagen.2023.130397 1872-8006 |
| url |
https://hdl.handle.net/10495/35522 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
Biochim. Biophys. Acta, Gen. Subj. |
| dc.relation.citationendpage.spa.fl_str_mv |
9 |
| dc.relation.citationissue.spa.fl_str_mv |
9 |
| dc.relation.citationstartpage.spa.fl_str_mv |
1 |
| dc.relation.citationvolume.spa.fl_str_mv |
1867 |
| dc.relation.ispartofjournal.spa.fl_str_mv |
Biochimica et Biophysica Acta - General Subjects |
| dc.rights.uri.*.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/2.5/co/ |
| dc.rights.uri.spa.fl_str_mv |
https://creativecommons.org/licenses/by-nc-nd/4.0/ |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| dc.rights.coar.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-nd/2.5/co/ https://creativecommons.org/licenses/by-nc-nd/4.0/ http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.extent.spa.fl_str_mv |
9 |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.publisher.spa.fl_str_mv |
Elsevier |
| dc.publisher.place.spa.fl_str_mv |
Ámsterdam, Países Bajos |
| institution |
Universidad de Antioquia |
| bitstream.url.fl_str_mv |
https://bibliotecadigital.udea.edu.co/bitstreams/509a8945-4420-45fb-8dce-2dc62c39e8ba/download https://bibliotecadigital.udea.edu.co/bitstreams/fae94593-57cd-47b1-981d-214bf13c4d96/download https://bibliotecadigital.udea.edu.co/bitstreams/64b48426-a09e-4b08-9273-d6995eb727d5/download https://bibliotecadigital.udea.edu.co/bitstreams/68d2576b-65e0-4dd1-b863-b55b17651dc7/download https://bibliotecadigital.udea.edu.co/bitstreams/b252f72f-6a44-4fa3-a634-65f1c7c255c5/download https://bibliotecadigital.udea.edu.co/bitstreams/ac1de860-05be-4d18-97d2-818470034880/download https://bibliotecadigital.udea.edu.co/bitstreams/662a3e3e-ef60-4da6-b15b-7468ec05b043/download |
| bitstream.checksum.fl_str_mv |
91f866d87d0fcc8fdf68a97ab57fd283 46299faf8d90b66cfcf81d39268cd356 b88b088d9957e670ce3b3fbe2eedbc13 8a4605be74aa9ea9d79846c1fba20a33 5c76e9c526fcbfaa28aa4d42ebdfd877 c89740449ccfc28be4a7e8372a5f1360 9297d151db8fe595efcb94f6ce2565bf |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Institucional de la Universidad de Antioquia |
| repository.mail.fl_str_mv |
aplicacionbibliotecadigitalbiblioteca@udea.edu.co |
| _version_ |
1851052360846016512 |
| spelling |
Urcuqui Inchima, SilvioVelilla Hernández, Paula AndreaTamayo Molina, Yordi SebastiánHernández Sarmiento, Lady JohanaInmunovirología2023-06-15T18:10:26Z2023-06-15T18:10:26Z2023Tamayo-Molina YS, Velilla PA, Hernández-Sarmiento LJ, Urcuqui-Inchima S. Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophages. Biochim Biophys Acta Gen Subj. 2023 Jun 7;1867(9):130397. doi: 10.1016/j.bbagen.2023.130397. Epub ahead of print. PMID: 37290716.0304-4165https://hdl.handle.net/10495/3552210.1016/j.bbagen.2023.1303971872-8006ABSTRACT: Background: Glycolytic inhibitor 2-deoxy-D-glucose (2-DG) binds to hexokinase in a non-competitive manner and phosphoglucose isomerase in a competitive manner, blocking the initial steps of the glycolytic pathway. Although 2-DG stimulates endoplasmic reticulum (ER) stress, activating the unfolded protein response to restore protein homeostasis, it is unclear which ER stress-related genes are modulated in response to 2-DG treatment in human primary cells. Here, we aimed to determine whether the treatment of monocytes and monocyte-derived macrophages (MDMs) with 2-DG leads to a transcriptional profile specific to ER stress. Methods: We performed bioinformatics analysis to identify differentially expressed genes (DEGs) in previously reported RNA-seq datasets of 2-DG treated cells. RT-qPCR was performed to verify the sequencing data on cultured MDMs. Results: A total of 95 common DEGs were found by transcriptional analysis of monocytes and MDMs treated with 2-DG. Among these, 74 were up-regulated and 21 were down-regulated. Multitranscript analysis showed that DEGs are linked to integrated stress response (GRP78/BiP, PERK, ATF4, CHOP, GADD34, IRE1α, XBP1, SESN2, ASNS, PHGDH), hexosamine biosynthetic pathway (GFAT1, GNA1, PGM3, UAP1), and mannose metabolism (GMPPA and GMPPB). Conclusions: Results reveal that 2-DG triggers a gene expression program that might be involved in restoring protein homeostasis in primary cells. General significance: 2-DG is known to inhibit glycolysis and induce ER stress; however, its effect on gene expression in primary cells is not well understood. This work shows that 2-DG is a stress inducer shifting the metabolic state of monocytes and macrophagesUniversidad de Antioquia. Vicerrectoría de investigación. Comité para el Desarrollo de la Investigación - CODIColombia. Ministerio de Ciencia Tecnología e Innovación - MinicienciasCOL00124449application/pdfengElsevierÁmsterdam, Países Bajoshttp://creativecommons.org/licenses/by-nc-nd/2.5/co/https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Multitranscript analysis reveals an effect of 2-deoxy-d-glucose on gene expression linked to unfolded protein response and integrated stress response in primary human monocytes and monocyte-derived macrophagesArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionDesoxiglucosaDeoxyglucoseEstrés del Retículo EndoplásmicoEndoplasmic Reticulum StressRespuesta de Proteína DesplegadaUnfolded Protein ResponseGlicosilaciónGlycosylationCélulasCellsBiochim. Biophys. Acta, Gen. Subj.9911867Biochimica et Biophysica Acta - General Subjects2020-34065.111584467188.RoR:03bp5hc83RoR:048jthh02PublicationORIGINALUrcuquiSilvio--2023_MultitranscriptAnalysisReveals.pdfUrcuquiSilvio--2023_MultitranscriptAnalysisReveals.pdfArtículo de investigaciónapplication/pdf8892263https://bibliotecadigital.udea.edu.co/bitstreams/509a8945-4420-45fb-8dce-2dc62c39e8ba/download91f866d87d0fcc8fdf68a97ab57fd283MD51trueAnonymousREADSistemaBibliotecas_2023_Autorizacion_Repositorio_Firmado.docxSistemaBibliotecas_2023_Autorizacion_Repositorio_Firmado.docxFormato de autorizaciónapplication/vnd.openxmlformats-officedocument.wordprocessingml.document265646https://bibliotecadigital.udea.edu.co/bitstreams/fae94593-57cd-47b1-981d-214bf13c4d96/download46299faf8d90b66cfcf81d39268cd356MD52falseAnonymousREADCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8823https://bibliotecadigital.udea.edu.co/bitstreams/64b48426-a09e-4b08-9273-d6995eb727d5/downloadb88b088d9957e670ce3b3fbe2eedbc13MD53falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/68d2576b-65e0-4dd1-b863-b55b17651dc7/download8a4605be74aa9ea9d79846c1fba20a33MD54falseAnonymousREADTEXTUrcuquiSilvio--2023_MultitranscriptAnalysisReveals.pdf.txtUrcuquiSilvio--2023_MultitranscriptAnalysisReveals.pdf.txtExtracted texttext/plain64865https://bibliotecadigital.udea.edu.co/bitstreams/b252f72f-6a44-4fa3-a634-65f1c7c255c5/download5c76e9c526fcbfaa28aa4d42ebdfd877MD55falseAnonymousREADSistemaBibliotecas_2023_Autorizacion_Repositorio_Firmado.docx.txtSistemaBibliotecas_2023_Autorizacion_Repositorio_Firmado.docx.txtExtracted texttext/plain5140https://bibliotecadigital.udea.edu.co/bitstreams/ac1de860-05be-4d18-97d2-818470034880/downloadc89740449ccfc28be4a7e8372a5f1360MD57falseAnonymousREADTHUMBNAILUrcuquiSilvio--2023_MultitranscriptAnalysisReveals.pdf.jpgUrcuquiSilvio--2023_MultitranscriptAnalysisReveals.pdf.jpgGenerated Thumbnailimage/jpeg14789https://bibliotecadigital.udea.edu.co/bitstreams/662a3e3e-ef60-4da6-b15b-7468ec05b043/download9297d151db8fe595efcb94f6ce2565bfMD56falseAnonymousREAD10495/35522oai:bibliotecadigital.udea.edu.co:10495/355222025-03-26 21:07:04.909http://creativecommons.org/licenses/by-nc-nd/2.5/co/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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 |
