An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
ABSTRACT: The production of lactic acid from agroindustry waste products, such as whey, heavily relies on microorganisms within the genusLactobacillus. In this work, a genome-scale metabolic model was implemented from Vinay-Lara (iLca334_548), improved adding some enzymatic reactions and used to ana...
- Autores:
-
Balcázar Morales, Norman
Mejía Gómez, Carlos Eduardo
Ríos Estepa, Rigoberto
González López, Luis Alberto
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2022
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/41088
- Acceso en línea:
- https://hdl.handle.net/10495/41088
- Palabra clave:
- Amino Acids
Aminoácidos
Biomass
Biomasa
Fermentation
Fermentación
Lactic Acid
Ácido Láctico
Pyruvates
Piruvatos
Whey
Suero Lácteo
https://id.nlm.nih.gov/mesh/D000596
https://id.nlm.nih.gov/mesh/D018533
https://id.nlm.nih.gov/mesh/D005285
https://id.nlm.nih.gov/mesh/D019344
https://id.nlm.nih.gov/mesh/D011773
https://id.nlm.nih.gov/mesh/D000067796
- Rights
- openAccess
- License
- https://creativecommons.org/licenses/by/4.0/
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| dc.title.spa.fl_str_mv |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| title |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| spellingShingle |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism Amino Acids Aminoácidos Biomass Biomasa Fermentation Fermentación Lactic Acid Ácido Láctico Pyruvates Piruvatos Whey Suero Lácteo https://id.nlm.nih.gov/mesh/D000596 https://id.nlm.nih.gov/mesh/D018533 https://id.nlm.nih.gov/mesh/D005285 https://id.nlm.nih.gov/mesh/D019344 https://id.nlm.nih.gov/mesh/D011773 https://id.nlm.nih.gov/mesh/D000067796 |
| title_short |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| title_full |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| title_fullStr |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| title_full_unstemmed |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| title_sort |
An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism |
| dc.creator.fl_str_mv |
Balcázar Morales, Norman Mejía Gómez, Carlos Eduardo Ríos Estepa, Rigoberto González López, Luis Alberto |
| dc.contributor.author.none.fl_str_mv |
Balcázar Morales, Norman Mejía Gómez, Carlos Eduardo Ríos Estepa, Rigoberto González López, Luis Alberto |
| dc.contributor.researchgroup.spa.fl_str_mv |
Bioprocesos Genética Molecular (GENMOL) Grupo de Biotransformación Química Orgánica de Productos Naturales |
| dc.subject.decs.none.fl_str_mv |
Amino Acids Aminoácidos Biomass Biomasa Fermentation Fermentación Lactic Acid Ácido Láctico Pyruvates Piruvatos Whey Suero Lácteo |
| topic |
Amino Acids Aminoácidos Biomass Biomasa Fermentation Fermentación Lactic Acid Ácido Láctico Pyruvates Piruvatos Whey Suero Lácteo https://id.nlm.nih.gov/mesh/D000596 https://id.nlm.nih.gov/mesh/D018533 https://id.nlm.nih.gov/mesh/D005285 https://id.nlm.nih.gov/mesh/D019344 https://id.nlm.nih.gov/mesh/D011773 https://id.nlm.nih.gov/mesh/D000067796 |
| dc.subject.meshuri.none.fl_str_mv |
https://id.nlm.nih.gov/mesh/D000596 https://id.nlm.nih.gov/mesh/D018533 https://id.nlm.nih.gov/mesh/D005285 https://id.nlm.nih.gov/mesh/D019344 https://id.nlm.nih.gov/mesh/D011773 https://id.nlm.nih.gov/mesh/D000067796 |
| description |
ABSTRACT: The production of lactic acid from agroindustry waste products, such as whey, heavily relies on microorganisms within the genusLactobacillus. In this work, a genome-scale metabolic model was implemented from Vinay-Lara (iLca334_548), improved adding some enzymatic reactions and used to analyse metabolic fluxes ofLacticaseibacillus paracasei, which is aLactobacillusstrain isolated from whey used in the large-scale production of lactic acid. Overall, the highest rate of lactic acid productivity was 2.9 g l-1h-1, which equates to a dilution rate of 0.125 h-1, when continuous culture conditions were established. Restrictions on lactic acid production caused by exchange reactions, complex culture medium and intracellular metabolite concentrations were considered and included in the model. In total, theiLca334_548 model consisted of 1046 reactions and 959 metabolites, and flow balance analysis better predicted lactate flux than biomass. The distribution of fluxes exhibited an increase in lactate formation as biomass decreased. This finding is supported by the reactions carried out by glyceraldehyde 3-phosphate dehydrogenase, pyruvate formate lyase and ribose-5-phosphate isomerase, corroborating the modelled phenotype with experimental data. In conclusion, there is potential for the improvement of lactate production in a complex media by amino acid catabolism, especially when lactate is derived from pyruvate. |
| publishDate |
2022 |
| dc.date.issued.none.fl_str_mv |
2022 |
| dc.date.accessioned.none.fl_str_mv |
2024-08-11T12:40:51Z |
| dc.date.available.none.fl_str_mv |
2024-08-11T12:40:51Z |
| dc.type.spa.fl_str_mv |
Artículo de investigación |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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https://purl.org/redcol/resource_type/ART |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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info:eu-repo/semantics/article |
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info:eu-repo/semantics/publishedVersion |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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publishedVersion |
| dc.identifier.citation.spa.fl_str_mv |
Mejía-Gomez CE, Rios-Estepa R, Gonzalez-Lopez LA, Balcazar-Morales N. An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism. An Acad Bras Cienc. 2022 Aug 8;94(2):e20211071. doi: 10.1590/0001-3765202220211071. |
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0001-3765 |
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https://hdl.handle.net/10495/41088 |
| dc.identifier.doi.none.fl_str_mv |
10.1590/0001-3765202220211071 |
| dc.identifier.eissn.none.fl_str_mv |
1678-2690 |
| identifier_str_mv |
Mejía-Gomez CE, Rios-Estepa R, Gonzalez-Lopez LA, Balcazar-Morales N. An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism. An Acad Bras Cienc. 2022 Aug 8;94(2):e20211071. doi: 10.1590/0001-3765202220211071. 0001-3765 10.1590/0001-3765202220211071 1678-2690 |
| url |
https://hdl.handle.net/10495/41088 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
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An. Acad. Bras. Cienc. |
| dc.relation.citationendpage.spa.fl_str_mv |
15 |
| dc.relation.citationissue.spa.fl_str_mv |
2 |
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1 |
| dc.relation.citationvolume.spa.fl_str_mv |
94 |
| dc.relation.ispartofjournal.spa.fl_str_mv |
Anais da Academia Brasileira de Ciências |
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https://creativecommons.org/licenses/by/4.0/ |
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openAccess |
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15 páginas |
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Academia Brasileira de Ciencias |
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Río de Janeiro, Brasil |
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Universidad de Antioquia |
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Balcázar Morales, NormanMejía Gómez, Carlos EduardoRíos Estepa, RigobertoGonzález López, Luis AlbertoBioprocesosGenética Molecular (GENMOL)Grupo de BiotransformaciónQuímica Orgánica de Productos Naturales2024-08-11T12:40:51Z2024-08-11T12:40:51Z2022Mejía-Gomez CE, Rios-Estepa R, Gonzalez-Lopez LA, Balcazar-Morales N. An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism. An Acad Bras Cienc. 2022 Aug 8;94(2):e20211071. doi: 10.1590/0001-3765202220211071.0001-3765https://hdl.handle.net/10495/4108810.1590/0001-37652022202110711678-2690ABSTRACT: The production of lactic acid from agroindustry waste products, such as whey, heavily relies on microorganisms within the genusLactobacillus. In this work, a genome-scale metabolic model was implemented from Vinay-Lara (iLca334_548), improved adding some enzymatic reactions and used to analyse metabolic fluxes ofLacticaseibacillus paracasei, which is aLactobacillusstrain isolated from whey used in the large-scale production of lactic acid. Overall, the highest rate of lactic acid productivity was 2.9 g l-1h-1, which equates to a dilution rate of 0.125 h-1, when continuous culture conditions were established. Restrictions on lactic acid production caused by exchange reactions, complex culture medium and intracellular metabolite concentrations were considered and included in the model. In total, theiLca334_548 model consisted of 1046 reactions and 959 metabolites, and flow balance analysis better predicted lactate flux than biomass. The distribution of fluxes exhibited an increase in lactate formation as biomass decreased. This finding is supported by the reactions carried out by glyceraldehyde 3-phosphate dehydrogenase, pyruvate formate lyase and ribose-5-phosphate isomerase, corroborating the modelled phenotype with experimental data. In conclusion, there is potential for the improvement of lactate production in a complex media by amino acid catabolism, especially when lactate is derived from pyruvate.Universidad de Antioquia. Grupo de BiotransformaciónUniversidad de Antioquia. Genética Molecular (GENMOL)COL0006723COL0023715COL0066991COL001533915 páginasapplication/pdfengAcademia Brasileira de CienciasRío de Janeiro, Brasilhttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolismArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAmino AcidsAminoácidosBiomassBiomasaFermentationFermentaciónLactic AcidÁcido LácticoPyruvatesPiruvatosWheySuero Lácteohttps://id.nlm.nih.gov/mesh/D000596https://id.nlm.nih.gov/mesh/D018533https://id.nlm.nih.gov/mesh/D005285https://id.nlm.nih.gov/mesh/D019344https://id.nlm.nih.gov/mesh/D011773https://id.nlm.nih.gov/mesh/D000067796An. 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