An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism

ABSTRACT: The production of lactic acid from agroindustry waste products, such as whey, heavily relies on microorganisms within the genusLactobacillus. In this work, a genome-scale metabolic model was implemented from Vinay-Lara (iLca334_548), improved adding some enzymatic reactions and used to ana...

Full description

Autores:
Balcázar Morales, Norman
Mejía Gómez, Carlos Eduardo
Ríos Estepa, Rigoberto
González López, Luis Alberto
Tipo de recurso:
Article of investigation
Fecha de publicación:
2022
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/41088
Acceso en línea:
https://hdl.handle.net/10495/41088
Palabra clave:
Amino Acids
Aminoácidos
Biomass
Biomasa
Fermentation
Fermentación
Lactic Acid
Ácido Láctico
Pyruvates
Piruvatos
Whey
Suero Lácteo
https://id.nlm.nih.gov/mesh/D000596
https://id.nlm.nih.gov/mesh/D018533
https://id.nlm.nih.gov/mesh/D005285
https://id.nlm.nih.gov/mesh/D019344
https://id.nlm.nih.gov/mesh/D011773
https://id.nlm.nih.gov/mesh/D000067796
Rights
openAccess
License
https://creativecommons.org/licenses/by/4.0/
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repository_id_str
dc.title.spa.fl_str_mv An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
title An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
spellingShingle An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
Amino Acids
Aminoácidos
Biomass
Biomasa
Fermentation
Fermentación
Lactic Acid
Ácido Láctico
Pyruvates
Piruvatos
Whey
Suero Lácteo
https://id.nlm.nih.gov/mesh/D000596
https://id.nlm.nih.gov/mesh/D018533
https://id.nlm.nih.gov/mesh/D005285
https://id.nlm.nih.gov/mesh/D019344
https://id.nlm.nih.gov/mesh/D011773
https://id.nlm.nih.gov/mesh/D000067796
title_short An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
title_full An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
title_fullStr An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
title_full_unstemmed An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
title_sort An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism
dc.creator.fl_str_mv Balcázar Morales, Norman
Mejía Gómez, Carlos Eduardo
Ríos Estepa, Rigoberto
González López, Luis Alberto
dc.contributor.author.none.fl_str_mv Balcázar Morales, Norman
Mejía Gómez, Carlos Eduardo
Ríos Estepa, Rigoberto
González López, Luis Alberto
dc.contributor.researchgroup.spa.fl_str_mv Bioprocesos
Genética Molecular (GENMOL)
Grupo de Biotransformación
Química Orgánica de Productos Naturales
dc.subject.decs.none.fl_str_mv Amino Acids
Aminoácidos
Biomass
Biomasa
Fermentation
Fermentación
Lactic Acid
Ácido Láctico
Pyruvates
Piruvatos
Whey
Suero Lácteo
topic Amino Acids
Aminoácidos
Biomass
Biomasa
Fermentation
Fermentación
Lactic Acid
Ácido Láctico
Pyruvates
Piruvatos
Whey
Suero Lácteo
https://id.nlm.nih.gov/mesh/D000596
https://id.nlm.nih.gov/mesh/D018533
https://id.nlm.nih.gov/mesh/D005285
https://id.nlm.nih.gov/mesh/D019344
https://id.nlm.nih.gov/mesh/D011773
https://id.nlm.nih.gov/mesh/D000067796
dc.subject.meshuri.none.fl_str_mv https://id.nlm.nih.gov/mesh/D000596
https://id.nlm.nih.gov/mesh/D018533
https://id.nlm.nih.gov/mesh/D005285
https://id.nlm.nih.gov/mesh/D019344
https://id.nlm.nih.gov/mesh/D011773
https://id.nlm.nih.gov/mesh/D000067796
description ABSTRACT: The production of lactic acid from agroindustry waste products, such as whey, heavily relies on microorganisms within the genusLactobacillus. In this work, a genome-scale metabolic model was implemented from Vinay-Lara (iLca334_548), improved adding some enzymatic reactions and used to analyse metabolic fluxes ofLacticaseibacillus paracasei, which is aLactobacillusstrain isolated from whey used in the large-scale production of lactic acid. Overall, the highest rate of lactic acid productivity was 2.9 g l-1h-1, which equates to a dilution rate of 0.125 h-1, when continuous culture conditions were established. Restrictions on lactic acid production caused by exchange reactions, complex culture medium and intracellular metabolite concentrations were considered and included in the model. In total, theiLca334_548 model consisted of 1046 reactions and 959 metabolites, and flow balance analysis better predicted lactate flux than biomass. The distribution of fluxes exhibited an increase in lactate formation as biomass decreased. This finding is supported by the reactions carried out by glyceraldehyde 3-phosphate dehydrogenase, pyruvate formate lyase and ribose-5-phosphate isomerase, corroborating the modelled phenotype with experimental data. In conclusion, there is potential for the improvement of lactate production in a complex media by amino acid catabolism, especially when lactate is derived from pyruvate.
publishDate 2022
dc.date.issued.none.fl_str_mv 2022
dc.date.accessioned.none.fl_str_mv 2024-08-11T12:40:51Z
dc.date.available.none.fl_str_mv 2024-08-11T12:40:51Z
dc.type.spa.fl_str_mv Artículo de investigación
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dc.identifier.citation.spa.fl_str_mv Mejía-Gomez CE, Rios-Estepa R, Gonzalez-Lopez LA, Balcazar-Morales N. An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism. An Acad Bras Cienc. 2022 Aug 8;94(2):e20211071. doi: 10.1590/0001-3765202220211071.
dc.identifier.issn.none.fl_str_mv 0001-3765
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/10495/41088
dc.identifier.doi.none.fl_str_mv 10.1590/0001-3765202220211071
dc.identifier.eissn.none.fl_str_mv 1678-2690
identifier_str_mv Mejía-Gomez CE, Rios-Estepa R, Gonzalez-Lopez LA, Balcazar-Morales N. An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism. An Acad Bras Cienc. 2022 Aug 8;94(2):e20211071. doi: 10.1590/0001-3765202220211071.
0001-3765
10.1590/0001-3765202220211071
1678-2690
url https://hdl.handle.net/10495/41088
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv An. Acad. Bras. Cienc.
dc.relation.citationendpage.spa.fl_str_mv 15
dc.relation.citationissue.spa.fl_str_mv 2
dc.relation.citationstartpage.spa.fl_str_mv 1
dc.relation.citationvolume.spa.fl_str_mv 94
dc.relation.ispartofjournal.spa.fl_str_mv Anais da Academia Brasileira de Ciências
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dc.publisher.spa.fl_str_mv Academia Brasileira de Ciencias
dc.publisher.place.spa.fl_str_mv Río de Janeiro, Brasil
institution Universidad de Antioquia
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spelling Balcázar Morales, NormanMejía Gómez, Carlos EduardoRíos Estepa, RigobertoGonzález López, Luis AlbertoBioprocesosGenética Molecular (GENMOL)Grupo de BiotransformaciónQuímica Orgánica de Productos Naturales2024-08-11T12:40:51Z2024-08-11T12:40:51Z2022Mejía-Gomez CE, Rios-Estepa R, Gonzalez-Lopez LA, Balcazar-Morales N. An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolism. An Acad Bras Cienc. 2022 Aug 8;94(2):e20211071. doi: 10.1590/0001-3765202220211071.0001-3765https://hdl.handle.net/10495/4108810.1590/0001-37652022202110711678-2690ABSTRACT: The production of lactic acid from agroindustry waste products, such as whey, heavily relies on microorganisms within the genusLactobacillus. In this work, a genome-scale metabolic model was implemented from Vinay-Lara (iLca334_548), improved adding some enzymatic reactions and used to analyse metabolic fluxes ofLacticaseibacillus paracasei, which is aLactobacillusstrain isolated from whey used in the large-scale production of lactic acid. Overall, the highest rate of lactic acid productivity was 2.9 g l-1h-1, which equates to a dilution rate of 0.125 h-1, when continuous culture conditions were established. Restrictions on lactic acid production caused by exchange reactions, complex culture medium and intracellular metabolite concentrations were considered and included in the model. In total, theiLca334_548 model consisted of 1046 reactions and 959 metabolites, and flow balance analysis better predicted lactate flux than biomass. The distribution of fluxes exhibited an increase in lactate formation as biomass decreased. This finding is supported by the reactions carried out by glyceraldehyde 3-phosphate dehydrogenase, pyruvate formate lyase and ribose-5-phosphate isomerase, corroborating the modelled phenotype with experimental data. In conclusion, there is potential for the improvement of lactate production in a complex media by amino acid catabolism, especially when lactate is derived from pyruvate.Universidad de Antioquia. Grupo de BiotransformaciónUniversidad de Antioquia. Genética Molecular (GENMOL)COL0006723COL0023715COL0066991COL001533915 páginasapplication/pdfengAcademia Brasileira de CienciasRío de Janeiro, Brasilhttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2An experimental and in silico analysis of Lacticaseibacillus paracasei isolated from whey shows an association between lactate production and amino acid catabolismArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAmino AcidsAminoácidosBiomassBiomasaFermentationFermentaciónLactic AcidÁcido LácticoPyruvatesPiruvatosWheySuero Lácteohttps://id.nlm.nih.gov/mesh/D000596https://id.nlm.nih.gov/mesh/D018533https://id.nlm.nih.gov/mesh/D005285https://id.nlm.nih.gov/mesh/D019344https://id.nlm.nih.gov/mesh/D011773https://id.nlm.nih.gov/mesh/D000067796An. 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