Incomplete lineage sorting and phenotypic evolution in marsupials
Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during rapid speciation events, inducing incongruences between gene trees and species trees. ILS has complicated phylogenetic inference in many lineages, including hominids. However, we lack empirical evidence that ILS le...
- Autores:
-
Feng, Shaohong
Bai, Ming
González Lastra, Jorge Enrique
Li, Cai
Liu, Shiping
Tong, Yijie
Yang, Haidong
Chen, Guangji
Xie, Duo
Sears, Karen E
Franco, Lida M
Gaitan-Espitia, Juan Diego
Nespolo, Roberto F
Johnson, Warren E
Yang, Huanming
Brandies, Parice A
Hogg, Carolyn J.
Belov, Katherine
Renfree, Marilyn B.
Helgen, Kristofer M
Boomsma, Jacobus J.
Schierup, Mikkel Heide
Zhang, Guojie
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2022
- Institución:
- Universidad de Ibagué
- Repositorio:
- Repositorio Universidad de Ibagué
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.unibague.edu.co:20.500.12313/5506
- Acceso en línea:
- https://hdl.handle.net/20.500.12313/5506
- Palabra clave:
- Ordenamiento filogenético incompleto
Evolución fenotípica en marsupiales
Biogeography
CoalHMM
Gene-phenotype incongruence
Hemiplasy
Incomplete lineage sorting
Marsupial
Monito del monte
Phylogenetic inference
Rapid speciation
Trait evolution
- Rights
- openAccess
- License
- http://purl.org/coar/access_right/c_abf2
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UNIBAGUE2_9583df69d1b093d96377de16b6099787 |
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oai:repositorio.unibague.edu.co:20.500.12313/5506 |
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UNIBAGUE2 |
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Repositorio Universidad de Ibagué |
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|
| dc.title.eng.fl_str_mv |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| title |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| spellingShingle |
Incomplete lineage sorting and phenotypic evolution in marsupials Ordenamiento filogenético incompleto Evolución fenotípica en marsupiales Biogeography CoalHMM Gene-phenotype incongruence Hemiplasy Incomplete lineage sorting Marsupial Monito del monte Phylogenetic inference Rapid speciation Trait evolution |
| title_short |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| title_full |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| title_fullStr |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| title_full_unstemmed |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| title_sort |
Incomplete lineage sorting and phenotypic evolution in marsupials |
| dc.creator.fl_str_mv |
Feng, Shaohong Bai, Ming González Lastra, Jorge Enrique Li, Cai Liu, Shiping Tong, Yijie Yang, Haidong Chen, Guangji Xie, Duo Sears, Karen E Franco, Lida M Gaitan-Espitia, Juan Diego Nespolo, Roberto F Johnson, Warren E Yang, Huanming Brandies, Parice A Hogg, Carolyn J. Belov, Katherine Renfree, Marilyn B. Helgen, Kristofer M Boomsma, Jacobus J. Schierup, Mikkel Heide Zhang, Guojie |
| dc.contributor.author.none.fl_str_mv |
Feng, Shaohong Bai, Ming González Lastra, Jorge Enrique Li, Cai Liu, Shiping Tong, Yijie Yang, Haidong Chen, Guangji Xie, Duo Sears, Karen E Franco, Lida M Gaitan-Espitia, Juan Diego Nespolo, Roberto F Johnson, Warren E Yang, Huanming Brandies, Parice A Hogg, Carolyn J. Belov, Katherine Renfree, Marilyn B. Helgen, Kristofer M Boomsma, Jacobus J. Schierup, Mikkel Heide Zhang, Guojie |
| dc.subject.armarc.none.fl_str_mv |
Ordenamiento filogenético incompleto Evolución fenotípica en marsupiales |
| topic |
Ordenamiento filogenético incompleto Evolución fenotípica en marsupiales Biogeography CoalHMM Gene-phenotype incongruence Hemiplasy Incomplete lineage sorting Marsupial Monito del monte Phylogenetic inference Rapid speciation Trait evolution |
| dc.subject.proposal.eng.fl_str_mv |
Biogeography CoalHMM Gene-phenotype incongruence Hemiplasy Incomplete lineage sorting Marsupial Monito del monte Phylogenetic inference Rapid speciation Trait evolution |
| description |
Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during rapid speciation events, inducing incongruences between gene trees and species trees. ILS has complicated phylogenetic inference in many lineages, including hominids. However, we lack empirical evidence that ILS leads to incongruent phenotypic variation. Here, we performed phylogenomic analyses to show that the South American monito del monte is the sister lineage of all Australian marsupials, although over 31% of its genome is closer to the Diprotodontia than to other Australian groups due to ILS during ancient radiation. Pervasive conflicting phylogenetic signals across the whole genome are consistent with some of the morphological variation among extant marsupials. We detected hundreds of genes that experienced stochastic fixation during ILS, encoding the same amino acids in non-sister species. Using functional experiments, we confirm how ILS may have directly contributed to hemiplasy in morphological traits that were established during rapid marsupial speciation ca. |
| publishDate |
2022 |
| dc.date.issued.none.fl_str_mv |
2022-05-17 |
| dc.date.accessioned.none.fl_str_mv |
2025-08-20T23:02:40Z |
| dc.date.available.none.fl_str_mv |
2025-08-20T23:02:40Z |
| dc.type.none.fl_str_mv |
Artículo de revista |
| dc.type.coar.none.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.coarversion.none.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.content.none.fl_str_mv |
Text |
| dc.type.driver.none.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.version.none.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| status_str |
publishedVersion |
| dc.identifier.citation.none.fl_str_mv |
Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K., Franco, L., Gaitan-Espitia, J., Nespolo, R., Johnson, W., Yang, H., Brandies, P., Hogg, C., Belov, K., Renfree, M., Helgen, K., Boomsma, J., Schierup, M. y Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10). 1646-1660e18. DOI: 10.1016/j.cell.2022.03.034 |
| dc.identifier.doi.none.fl_str_mv |
10.1016/j.cell.2022.03.034 |
| dc.identifier.eissn.none.fl_str_mv |
10974172 |
| dc.identifier.issn.none.fl_str_mv |
00928674 |
| dc.identifier.uri.none.fl_str_mv |
https://hdl.handle.net/20.500.12313/5506 |
| identifier_str_mv |
Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K., Franco, L., Gaitan-Espitia, J., Nespolo, R., Johnson, W., Yang, H., Brandies, P., Hogg, C., Belov, K., Renfree, M., Helgen, K., Boomsma, J., Schierup, M. y Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10). 1646-1660e18. DOI: 10.1016/j.cell.2022.03.034 10.1016/j.cell.2022.03.034 10974172 00928674 |
| url |
https://hdl.handle.net/20.500.12313/5506 |
| dc.language.iso.none.fl_str_mv |
eng |
| language |
eng |
| dc.relation.citationendpage.none.fl_str_mv |
1660e18 |
| dc.relation.citationissue.none.fl_str_mv |
10 |
| dc.relation.citationstartpage.none.fl_str_mv |
1646 |
| dc.relation.citationvolume.none.fl_str_mv |
185 |
| dc.relation.ispartofjournal.none.fl_str_mv |
Cell |
| dc.relation.references.none.fl_str_mv |
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Feng, Shaohong7a72ec96-dbac-446b-8a60-71f215e58d82-1Bai, Mingffa0d64b-5ad6-43ad-91fc-ccf361da2548-1González Lastra, Jorge Enrique3b4495fa-6d41-4714-b737-57418ad384a8600Li, Cai997cf0a3-9822-4e64-9cb2-9802763d012c-1Liu, Shipingdf685187-6457-4850-b0db-d5aae0b10f99-1Tong, Yijie119f9fa8-9e09-4eed-95cd-e2bafc90f44d-1Yang, Haidong34f51834-2230-4689-afd8-437d9d8e1706-1Chen, Guangji70cc8679-5ccf-4f2f-8561-44e3fcfb9160-1Xie, Duo75e7815a-5461-43f9-9933-dd252e9b24c7-1Sears, Karen E37ef386a-66a2-4e6f-afb1-2ca5385eb792-1Franco, Lida Mf0957cf0-877f-43bd-827c-6bbb3e67502c-1Gaitan-Espitia, Juan Diego5caa5ba2-bd6a-4435-b042-a46e99c34111-1Nespolo, Roberto Fe99b9559-30e4-43e3-bf2a-3e9b83ebc092-1Johnson, Warren E48eceb15-700e-45de-a91c-041c000fe0b2-1Yang, Huanmingb3d8b3c7-b8d6-43ac-b33c-01576080d510-1Brandies, Parice Adbab6603-e6bd-43d6-a0c8-8ba11a9db8a5-1Hogg, Carolyn J.02616a28-f56b-41f6-8cc6-2b5ce7826741-1Belov, Katherined61b58a9-c027-4514-b9f1-0a906011857e-1Renfree, Marilyn B.ffac844d-6ecb-407f-ac14-3cec8b0cb3e3-1Helgen, Kristofer M6bf09453-5424-4789-b9ec-7ff6c4f94ac7-1Boomsma, Jacobus J.4924cd12-998b-40ea-ad7b-f87a11a909cc-1Schierup, Mikkel Heidee07c3e1d-fabf-457b-b7d9-bbaf665a7f1c-1Zhang, Guojief7c0d0aa-f67e-4500-93ea-5db95bdb210e-12025-08-20T23:02:40Z2025-08-20T23:02:40Z2022-05-17Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during rapid speciation events, inducing incongruences between gene trees and species trees. ILS has complicated phylogenetic inference in many lineages, including hominids. However, we lack empirical evidence that ILS leads to incongruent phenotypic variation. Here, we performed phylogenomic analyses to show that the South American monito del monte is the sister lineage of all Australian marsupials, although over 31% of its genome is closer to the Diprotodontia than to other Australian groups due to ILS during ancient radiation. Pervasive conflicting phylogenetic signals across the whole genome are consistent with some of the morphological variation among extant marsupials. We detected hundreds of genes that experienced stochastic fixation during ILS, encoding the same amino acids in non-sister species. Using functional experiments, we confirm how ILS may have directly contributed to hemiplasy in morphological traits that were established during rapid marsupial speciation ca.application/pdfFeng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K., Franco, L., Gaitan-Espitia, J., Nespolo, R., Johnson, W., Yang, H., Brandies, P., Hogg, C., Belov, K., Renfree, M., Helgen, K., Boomsma, J., Schierup, M. y Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10). 1646-1660e18. DOI: 10.1016/j.cell.2022.03.03410.1016/j.cell.2022.03.0341097417200928674https://hdl.handle.net/20.500.12313/5506engElsevier B.V.Estados Unidos1660e18101646185CellL. Almasy, J. Blangero Multipoint quantitative-trait linkage analysis in general pedigrees Am. J. Hum. Genet., 62 (1998), pp. 1198-1211S.F. Altschul, W. Gish, W. Miller, E.W. Myers, D.J. Lipman Basic local alignment search tool J. Mol. Biol., 215 (1990), pp. 403-410H. 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