Taxonomical evaluation of plant genetic markers by bayesian classifier

DNA barcodes are standardized sequences that range between 400-800 bp, vary at different taxonomic levels, and make it possible to identify individuals of species that have been previously assigned taxonomically. Several barcodes have been identified in different groups in the tree of life. However,...

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Autores:
Matiz Cerón, Luisa Fernanda
Tipo de recurso:
Fecha de publicación:
2021
Institución:
Universidad de los Andes
Repositorio:
Séneca: repositorio Uniandes
Idioma:
eng
OAI Identifier:
oai:repositorio.uniandes.edu.co:1992/51680
Acceso en línea:
http://hdl.handle.net/1992/51680
Palabra clave:
Marcadores genéticos - Investigaciones
ADN - Investigaciones
Clasificadores bayesianos ingenuos
Biología
Rights
openAccess
License
http://creativecommons.org/licenses/by-nc-sa/4.0/
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spelling Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Reyes Muñoz, Alejandro9e4d3f3f-d194-4692-aa8b-4497c83504ba400Anzola Lagos, Juan Manuelvirtual::13967-1Matiz Cerón, Luisa Fernanda0439a3af-e534-4813-8644-ca1f64e826f5500Duitama Castellanos, Jorge Alexander2021-08-10T18:38:21Z2021-08-10T18:38:21Z2021http://hdl.handle.net/1992/5168022816.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/DNA barcodes are standardized sequences that range between 400-800 bp, vary at different taxonomic levels, and make it possible to identify individuals of species that have been previously assigned taxonomically. Several barcodes have been identified in different groups in the tree of life. However, there are groups that lack an accurate DNA marker, and even more so, accurate strategies that enable verification of their taxonomic affiliation. Several DNA barcodes have been postulated for plants, nonetheless, their classification potential has not been evaluated for metabarcoding, and as a result, it would appear as no one of them excels above the others in this area. One tool that has recently gained traction is Nave Bayesian Classifiers; this type of classifier is based on the independence of attributes and the allocation of categories in each context. The present study aims at evaluating the classification power of several plant genetic markers that have been...Los códigos de barras de ADN son secuencias estandarizadas que oscilan entre 400 y 800 pb, varían en diferentes niveles taxonómicos y permiten identificar individuos de especies que han sido previamente asignadas taxonómicamente. Se han identificado varios códigos de barras en diferentes grupos en el árbol de la vida. Sin embargo, hay grupos que carecen de un marcador preciso de ADN y, más aún, de estrategias precisas que permitan verificar su afiliación taxonómica. Se han postulado varios códigos de barras de ADN para las plantas, sin embargo, no se ha evaluado su potencial de clasificación para el metabarcaje y, en consecuencia, parecería que ninguno de ellos sobresale por encima de los demás en este ámbito. Un instrumento que ha cobrado impulso recientemente es el de los clasificadores bayesianos ingenuos; este tipo de clasificador se basa en la independencia de los atributos y la asignación de categorías en cada contexto...Magíster en Biología ComputacionalMaestría31 hojasapplication/pdfengUniversidad de los AndesMaestría en Biología ComputacionalFacultad de CienciasDepartamento de Ciencias BiológicasTaxonomical evaluation of plant genetic markers by bayesian classifierTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMMarcadores genéticos - InvestigacionesADN - InvestigacionesClasificadores bayesianos ingenuosBiología201326928Publicationf8061409-101d-40c1-b5ce-7c26cc887f95virtual::13967-1f8061409-101d-40c1-b5ce-7c26cc887f95virtual::13967-1ORIGINAL22816.pdfapplication/pdf723020https://repositorio.uniandes.edu.co/bitstreams/d91b998a-3b17-497c-84f3-a2725ca11fe3/download71f1d9d4c5ff926ecd4e49e847599004MD51TEXT22816.pdf.txt22816.pdf.txtExtracted texttext/plain51602https://repositorio.uniandes.edu.co/bitstreams/0f2fc046-29d7-4976-a784-4a31ca3cc86d/downloadf341ef3a38e44a4127172d6e8e85aeeaMD54THUMBNAIL22816.pdf.jpg22816.pdf.jpgIM Thumbnailimage/jpeg10938https://repositorio.uniandes.edu.co/bitstreams/41704f48-8a24-40ec-9759-fb8c713fc5ab/download3541648ade8d7ecb424858fdd972a89dMD551992/51680oai:repositorio.uniandes.edu.co:1992/516802024-03-13 15:04:39.617http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co
dc.title.spa.fl_str_mv Taxonomical evaluation of plant genetic markers by bayesian classifier
title Taxonomical evaluation of plant genetic markers by bayesian classifier
spellingShingle Taxonomical evaluation of plant genetic markers by bayesian classifier
Marcadores genéticos - Investigaciones
ADN - Investigaciones
Clasificadores bayesianos ingenuos
Biología
title_short Taxonomical evaluation of plant genetic markers by bayesian classifier
title_full Taxonomical evaluation of plant genetic markers by bayesian classifier
title_fullStr Taxonomical evaluation of plant genetic markers by bayesian classifier
title_full_unstemmed Taxonomical evaluation of plant genetic markers by bayesian classifier
title_sort Taxonomical evaluation of plant genetic markers by bayesian classifier
dc.creator.fl_str_mv Matiz Cerón, Luisa Fernanda
dc.contributor.advisor.none.fl_str_mv Reyes Muñoz, Alejandro
Anzola Lagos, Juan Manuel
dc.contributor.author.none.fl_str_mv Matiz Cerón, Luisa Fernanda
dc.contributor.jury.none.fl_str_mv Duitama Castellanos, Jorge Alexander
dc.subject.armarc.none.fl_str_mv Marcadores genéticos - Investigaciones
ADN - Investigaciones
Clasificadores bayesianos ingenuos
topic Marcadores genéticos - Investigaciones
ADN - Investigaciones
Clasificadores bayesianos ingenuos
Biología
dc.subject.themes.none.fl_str_mv Biología
description DNA barcodes are standardized sequences that range between 400-800 bp, vary at different taxonomic levels, and make it possible to identify individuals of species that have been previously assigned taxonomically. Several barcodes have been identified in different groups in the tree of life. However, there are groups that lack an accurate DNA marker, and even more so, accurate strategies that enable verification of their taxonomic affiliation. Several DNA barcodes have been postulated for plants, nonetheless, their classification potential has not been evaluated for metabarcoding, and as a result, it would appear as no one of them excels above the others in this area. One tool that has recently gained traction is Nave Bayesian Classifiers; this type of classifier is based on the independence of attributes and the allocation of categories in each context. The present study aims at evaluating the classification power of several plant genetic markers that have been...
publishDate 2021
dc.date.accessioned.none.fl_str_mv 2021-08-10T18:38:21Z
dc.date.available.none.fl_str_mv 2021-08-10T18:38:21Z
dc.date.issued.none.fl_str_mv 2021
dc.type.spa.fl_str_mv Trabajo de grado - Maestría
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dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/1992/51680
dc.identifier.pdf.none.fl_str_mv 22816.pdf
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identifier_str_mv 22816.pdf
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dc.language.iso.none.fl_str_mv eng
language eng
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
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eu_rights_str_mv openAccess
dc.format.extent.none.fl_str_mv 31 hojas
dc.format.mimetype.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidad de los Andes
dc.publisher.program.none.fl_str_mv Maestría en Biología Computacional
dc.publisher.faculty.none.fl_str_mv Facultad de Ciencias
dc.publisher.department.none.fl_str_mv Departamento de Ciencias Biológicas
publisher.none.fl_str_mv Universidad de los Andes
institution Universidad de los Andes
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