Taxonomical evaluation of plant genetic markers by bayesian classifier
DNA barcodes are standardized sequences that range between 400-800 bp, vary at different taxonomic levels, and make it possible to identify individuals of species that have been previously assigned taxonomically. Several barcodes have been identified in different groups in the tree of life. However,...
- Autores:
-
Matiz Cerón, Luisa Fernanda
- Tipo de recurso:
- Fecha de publicación:
- 2021
- Institución:
- Universidad de los Andes
- Repositorio:
- Séneca: repositorio Uniandes
- Idioma:
- eng
- OAI Identifier:
- oai:repositorio.uniandes.edu.co:1992/51680
- Acceso en línea:
- http://hdl.handle.net/1992/51680
- Palabra clave:
- Marcadores genéticos - Investigaciones
ADN - Investigaciones
Clasificadores bayesianos ingenuos
Biología
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-sa/4.0/
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Al consultar y hacer uso de este recurso, está aceptando las condiciones de uso establecidas por los autores.http://creativecommons.org/licenses/by-nc-sa/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Reyes Muñoz, Alejandro9e4d3f3f-d194-4692-aa8b-4497c83504ba400Anzola Lagos, Juan Manuelvirtual::13967-1Matiz Cerón, Luisa Fernanda0439a3af-e534-4813-8644-ca1f64e826f5500Duitama Castellanos, Jorge Alexander2021-08-10T18:38:21Z2021-08-10T18:38:21Z2021http://hdl.handle.net/1992/5168022816.pdfinstname:Universidad de los Andesreponame:Repositorio Institucional Sénecarepourl:https://repositorio.uniandes.edu.co/DNA barcodes are standardized sequences that range between 400-800 bp, vary at different taxonomic levels, and make it possible to identify individuals of species that have been previously assigned taxonomically. Several barcodes have been identified in different groups in the tree of life. However, there are groups that lack an accurate DNA marker, and even more so, accurate strategies that enable verification of their taxonomic affiliation. Several DNA barcodes have been postulated for plants, nonetheless, their classification potential has not been evaluated for metabarcoding, and as a result, it would appear as no one of them excels above the others in this area. One tool that has recently gained traction is Nave Bayesian Classifiers; this type of classifier is based on the independence of attributes and the allocation of categories in each context. The present study aims at evaluating the classification power of several plant genetic markers that have been...Los códigos de barras de ADN son secuencias estandarizadas que oscilan entre 400 y 800 pb, varían en diferentes niveles taxonómicos y permiten identificar individuos de especies que han sido previamente asignadas taxonómicamente. Se han identificado varios códigos de barras en diferentes grupos en el árbol de la vida. Sin embargo, hay grupos que carecen de un marcador preciso de ADN y, más aún, de estrategias precisas que permitan verificar su afiliación taxonómica. Se han postulado varios códigos de barras de ADN para las plantas, sin embargo, no se ha evaluado su potencial de clasificación para el metabarcaje y, en consecuencia, parecería que ninguno de ellos sobresale por encima de los demás en este ámbito. Un instrumento que ha cobrado impulso recientemente es el de los clasificadores bayesianos ingenuos; este tipo de clasificador se basa en la independencia de los atributos y la asignación de categorías en cada contexto...Magíster en Biología ComputacionalMaestría31 hojasapplication/pdfengUniversidad de los AndesMaestría en Biología ComputacionalFacultad de CienciasDepartamento de Ciencias BiológicasTaxonomical evaluation of plant genetic markers by bayesian classifierTrabajo de grado - Maestríainfo:eu-repo/semantics/masterThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85Texthttp://purl.org/redcol/resource_type/TMMarcadores genéticos - InvestigacionesADN - InvestigacionesClasificadores bayesianos ingenuosBiología201326928Publicationf8061409-101d-40c1-b5ce-7c26cc887f95virtual::13967-1f8061409-101d-40c1-b5ce-7c26cc887f95virtual::13967-1ORIGINAL22816.pdfapplication/pdf723020https://repositorio.uniandes.edu.co/bitstreams/d91b998a-3b17-497c-84f3-a2725ca11fe3/download71f1d9d4c5ff926ecd4e49e847599004MD51TEXT22816.pdf.txt22816.pdf.txtExtracted texttext/plain51602https://repositorio.uniandes.edu.co/bitstreams/0f2fc046-29d7-4976-a784-4a31ca3cc86d/downloadf341ef3a38e44a4127172d6e8e85aeeaMD54THUMBNAIL22816.pdf.jpg22816.pdf.jpgIM Thumbnailimage/jpeg10938https://repositorio.uniandes.edu.co/bitstreams/41704f48-8a24-40ec-9759-fb8c713fc5ab/download3541648ade8d7ecb424858fdd972a89dMD551992/51680oai:repositorio.uniandes.edu.co:1992/516802024-03-13 15:04:39.617http://creativecommons.org/licenses/by-nc-sa/4.0/open.accesshttps://repositorio.uniandes.edu.coRepositorio institucional Sénecaadminrepositorio@uniandes.edu.co |
dc.title.spa.fl_str_mv |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
title |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
spellingShingle |
Taxonomical evaluation of plant genetic markers by bayesian classifier Marcadores genéticos - Investigaciones ADN - Investigaciones Clasificadores bayesianos ingenuos Biología |
title_short |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
title_full |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
title_fullStr |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
title_full_unstemmed |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
title_sort |
Taxonomical evaluation of plant genetic markers by bayesian classifier |
dc.creator.fl_str_mv |
Matiz Cerón, Luisa Fernanda |
dc.contributor.advisor.none.fl_str_mv |
Reyes Muñoz, Alejandro Anzola Lagos, Juan Manuel |
dc.contributor.author.none.fl_str_mv |
Matiz Cerón, Luisa Fernanda |
dc.contributor.jury.none.fl_str_mv |
Duitama Castellanos, Jorge Alexander |
dc.subject.armarc.none.fl_str_mv |
Marcadores genéticos - Investigaciones ADN - Investigaciones Clasificadores bayesianos ingenuos |
topic |
Marcadores genéticos - Investigaciones ADN - Investigaciones Clasificadores bayesianos ingenuos Biología |
dc.subject.themes.none.fl_str_mv |
Biología |
description |
DNA barcodes are standardized sequences that range between 400-800 bp, vary at different taxonomic levels, and make it possible to identify individuals of species that have been previously assigned taxonomically. Several barcodes have been identified in different groups in the tree of life. However, there are groups that lack an accurate DNA marker, and even more so, accurate strategies that enable verification of their taxonomic affiliation. Several DNA barcodes have been postulated for plants, nonetheless, their classification potential has not been evaluated for metabarcoding, and as a result, it would appear as no one of them excels above the others in this area. One tool that has recently gained traction is Nave Bayesian Classifiers; this type of classifier is based on the independence of attributes and the allocation of categories in each context. The present study aims at evaluating the classification power of several plant genetic markers that have been... |
publishDate |
2021 |
dc.date.accessioned.none.fl_str_mv |
2021-08-10T18:38:21Z |
dc.date.available.none.fl_str_mv |
2021-08-10T18:38:21Z |
dc.date.issued.none.fl_str_mv |
2021 |
dc.type.spa.fl_str_mv |
Trabajo de grado - Maestría |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/masterThesis |
dc.type.content.spa.fl_str_mv |
Text |
dc.type.redcol.spa.fl_str_mv |
http://purl.org/redcol/resource_type/TM |
dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/1992/51680 |
dc.identifier.pdf.none.fl_str_mv |
22816.pdf |
dc.identifier.instname.spa.fl_str_mv |
instname:Universidad de los Andes |
dc.identifier.reponame.spa.fl_str_mv |
reponame:Repositorio Institucional Séneca |
dc.identifier.repourl.spa.fl_str_mv |
repourl:https://repositorio.uniandes.edu.co/ |
url |
http://hdl.handle.net/1992/51680 |
identifier_str_mv |
22816.pdf instname:Universidad de los Andes reponame:Repositorio Institucional Séneca repourl:https://repositorio.uniandes.edu.co/ |
dc.language.iso.none.fl_str_mv |
eng |
language |
eng |
dc.rights.uri.*.fl_str_mv |
http://creativecommons.org/licenses/by-nc-sa/4.0/ |
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info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc-sa/4.0/ http://purl.org/coar/access_right/c_abf2 |
eu_rights_str_mv |
openAccess |
dc.format.extent.none.fl_str_mv |
31 hojas |
dc.format.mimetype.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidad de los Andes |
dc.publisher.program.none.fl_str_mv |
Maestría en Biología Computacional |
dc.publisher.faculty.none.fl_str_mv |
Facultad de Ciencias |
dc.publisher.department.none.fl_str_mv |
Departamento de Ciencias Biológicas |
publisher.none.fl_str_mv |
Universidad de los Andes |
institution |
Universidad de los Andes |
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