Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia

ABSTRACT: Tilapia is the most farmed fish in Colombia. However, the genetic diversity and structure of broodstocks in the hatcheries of Antioquia province remains unknown. Objective: To analyze the genetic diversity and structure of one Nile and three red tilapia broodstocks in Antioquia, Colombia....

Full description

Autores:
Montoya López, Andrés Felipe
Tarazona Morales, Ariel Marcel
Olivera Ángel, Martha
Betancur López, John
Tipo de recurso:
Article of investigation
Fecha de publicación:
2019
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/14073
Acceso en línea:
http://hdl.handle.net/10495/14073
Palabra clave:
Peces - Colombia
Rights
openAccess
License
https://creativecommons.org/licenses/by-nc-sa/2.5/co/
id UDEA2_fc2ede9f6edc87dcdad58f55ac596055
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/14073
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
dc.title.translated.spa.fl_str_mv Diversidad genética de cuatro grupos de reproductores de tilapia (Oreochromis sp.) de Antioquia, Colombia
Diversidade genética de quatro estoques de reprodutores de tilápia (Oreochromis sp.) de Antioquia, Colombia
title Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
spellingShingle Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
Peces - Colombia
title_short Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
title_full Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
title_fullStr Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
title_full_unstemmed Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
title_sort Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, Colombia
dc.creator.fl_str_mv Montoya López, Andrés Felipe
Tarazona Morales, Ariel Marcel
Olivera Ángel, Martha
Betancur López, John
dc.contributor.author.none.fl_str_mv Montoya López, Andrés Felipe
Tarazona Morales, Ariel Marcel
Olivera Ángel, Martha
Betancur López, John
dc.contributor.researchgroup.spa.fl_str_mv Biogénesis
dc.subject.proposal.spa.fl_str_mv Peces - Colombia
topic Peces - Colombia
description ABSTRACT: Tilapia is the most farmed fish in Colombia. However, the genetic diversity and structure of broodstocks in the hatcheries of Antioquia province remains unknown. Objective: To analyze the genetic diversity and structure of one Nile and three red tilapia broodstocks in Antioquia, Colombia. Methods: Fish were genotyped using 24 microsatellite markers of 13 linkage groups in five multiple reactions. Genetic diversity metrics were estimated, and null alleles were detected. Analysis of Molecular Variance and analysis of number of clusters were used to describe the relationship between broodstocks. Results: Two microsatellites could not be amplified, and 22 were polymorphic. Average number of alleles per locus ranged 5.77 to 7.91. Locus UNH211 had the most alleles (17), whereas OMO032 had the fewest (4). Except for GM234 and OMO032, the analyzed loci had at least one private allele per population. Average effective number of alleles (3.37–4.03) was always less than the number of observed alleles. Significant deviations from Hardy-Weinberg equilibrium with heterozygote deficiencies were registered. Nine markers showed evidence of null alleles. The expected heterozygosity (0.65 to 0.67 per broodstock) was significantly higher than the observed heterozygosity (0.601 to 0.649) in the four populations. The fixation index for all broodstocks (excluding null alleles) was 0.0766 (95% confidence interval, 0.05092 to 0.10289). According to the molecular variance analysis, the greatest variation was between individuals rather than between groups of broodstocks or individuals within broodstocks. The genetic distance between the Nile and red broodstocks ranged from 0.43 to 0.54. Conclusions: Overall, these findings provide baseline information about the genetic diversity and structure of tilapia broodstocks in Antioquia, Colombia, useful for the management of hatcheries.
publishDate 2019
dc.date.issued.none.fl_str_mv 2019
dc.date.accessioned.none.fl_str_mv 2020-04-28T19:00:31Z
dc.date.available.none.fl_str_mv 2020-04-28T19:00:31Z
dc.type.spa.fl_str_mv Artículo de investigación
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.redcol.spa.fl_str_mv https://purl.org/redcol/resource_type/ART
dc.type.coarversion.spa.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/publishedVersion
format http://purl.org/coar/resource_type/c_2df8fbb1
status_str publishedVersion
dc.identifier.issn.none.fl_str_mv 0120-0690
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10495/14073
dc.identifier.eissn.none.fl_str_mv 2256-2958
identifier_str_mv 0120-0690
2256-2958
url http://hdl.handle.net/10495/14073
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv Rev. Colomb. Cienc. Pecu.
dc.relation.citationendpage.spa.fl_str_mv 213
dc.relation.citationissue.spa.fl_str_mv 3
dc.relation.citationstartpage.spa.fl_str_mv 201
dc.relation.citationvolume.spa.fl_str_mv 32
dc.relation.ispartofjournal.spa.fl_str_mv Revista Colombiana de Ciencias Pecuarias
dc.rights.uri.*.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/co/
dc.rights.uri.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0/
dc.rights.accessrights.*.fl_str_mv Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/co/
https://creativecommons.org/licenses/by-nc-sa/4.0/
Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.spa.fl_str_mv 15
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Universidad de Antioquia, Facultad de Ciencias Agrarias
dc.publisher.place.spa.fl_str_mv Medellín, Colombia
institution Universidad de Antioquia
bitstream.url.fl_str_mv https://bibliotecadigital.udea.edu.co/bitstreams/5a53e360-6a13-4be8-940d-c29292fa3189/download
https://bibliotecadigital.udea.edu.co/bitstreams/3d770a5f-746f-49a2-89ec-df51cf5e848c/download
https://bibliotecadigital.udea.edu.co/bitstreams/ddd530d2-7b40-4982-a9cd-b217b1e4e000/download
https://bibliotecadigital.udea.edu.co/bitstreams/61cdd702-cbf3-4067-9825-1b16378e6e89/download
https://bibliotecadigital.udea.edu.co/bitstreams/7ce6a656-5b06-47c7-a4a8-9eca473dbc1f/download
bitstream.checksum.fl_str_mv 91281d92c771a8062696baa96be99c7a
b88b088d9957e670ce3b3fbe2eedbc13
8a4605be74aa9ea9d79846c1fba20a33
f95f8d603c3ff1e78f0a3c5af485f577
b451c0ed98efad53cbb2e3d53b5206cb
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional de la Universidad de Antioquia
repository.mail.fl_str_mv aplicacionbibliotecadigitalbiblioteca@udea.edu.co
_version_ 1851052571758690304
spelling Montoya López, Andrés FelipeTarazona Morales, Ariel MarcelOlivera Ángel, MarthaBetancur López, JohnBiogénesis2020-04-28T19:00:31Z2020-04-28T19:00:31Z20190120-0690http://hdl.handle.net/10495/140732256-2958ABSTRACT: Tilapia is the most farmed fish in Colombia. However, the genetic diversity and structure of broodstocks in the hatcheries of Antioquia province remains unknown. Objective: To analyze the genetic diversity and structure of one Nile and three red tilapia broodstocks in Antioquia, Colombia. Methods: Fish were genotyped using 24 microsatellite markers of 13 linkage groups in five multiple reactions. Genetic diversity metrics were estimated, and null alleles were detected. Analysis of Molecular Variance and analysis of number of clusters were used to describe the relationship between broodstocks. Results: Two microsatellites could not be amplified, and 22 were polymorphic. Average number of alleles per locus ranged 5.77 to 7.91. Locus UNH211 had the most alleles (17), whereas OMO032 had the fewest (4). Except for GM234 and OMO032, the analyzed loci had at least one private allele per population. Average effective number of alleles (3.37–4.03) was always less than the number of observed alleles. Significant deviations from Hardy-Weinberg equilibrium with heterozygote deficiencies were registered. Nine markers showed evidence of null alleles. The expected heterozygosity (0.65 to 0.67 per broodstock) was significantly higher than the observed heterozygosity (0.601 to 0.649) in the four populations. The fixation index for all broodstocks (excluding null alleles) was 0.0766 (95% confidence interval, 0.05092 to 0.10289). According to the molecular variance analysis, the greatest variation was between individuals rather than between groups of broodstocks or individuals within broodstocks. The genetic distance between the Nile and red broodstocks ranged from 0.43 to 0.54. Conclusions: Overall, these findings provide baseline information about the genetic diversity and structure of tilapia broodstocks in Antioquia, Colombia, useful for the management of hatcheries.RESUMEN: Antecedentes. La tilapia es el pez más cultivado en Colombia; sin embargo, hay gran desconocimiento sobre la estructura genética actual de los reproductores. Objetivo: Analizar la diversidad y estructura genética de los reproductores de tres granjas de tilapia roja y una de tilapia Nilótica en Antioquia, Colombia. Métodos: Se utilizaron 24 microsatélites de 13 grupos de ligamiento amplificados en cinco reacciones múltiples. Se calcularon diferentes medidas de diversidad y se detectaron alelos nulos. Se utilizó un análisis de varianza molecular y uno de número de grupos para describir las relaciones entre las granjas de reproductores. Resultados: Dos marcadores no fueron amplificados y los 22 restantes fueron polimórficos. El promedio de alelos por locus varió entre 5,77 y 7,91. El mayor número de alelos (17) se encontró en el locus UNH 211, mientras que el menor se observó en OMO032 (cuatro). Veinte loci presentaron por lo menos un alelo privado. El número de alelos efectivos promedio fue menor al número de alelos observado y estuvo entre 3,37 y 4,03. Se registraron desviaciones significativas en el equilibrio Hardy Weinberg, en su mayoría con deficiencias de heterocigotos. Se encontraron evidencias de alelos nulos en nueve marcadores. La heterocigosidad observada estuvo entre 0,601 y 0,649. El índice de fijación fue de 0.0766 (intervalo de confianza de 95%, entre 0,05092 y 0,10289). Según el análisis de varianza molecular, la mayor fuente de variación se encontró entre individuos. El valor de la distancia de Nei entre los reproductores Nilóticos y rojos estuvo entre 0,43 y 0,54. Conclusión: Los resultados de la presente investigación proveen una línea base acerca de la diversidad y estructura genética de los reproductores de tilapia en Antioquia, Colombia, y son útiles para el manejo de granjas dedicadas a la reproducción de tilapia.RESUMO: Antecedentes. A tilápia é o peixe mais cultivado na Colômbia. É importante examinar a diversidade genética de peixes reprodutores. Objetivo: Avaliar a diversidade e estrutura genética de três estoques de reprodutores de tilápias vermelhas e um de tilápia Nilótica em Antioquia, Colômbia. Métodos: Utilizaram-se 24 microssatélites de 13 grupos de ligação em cinco reações múltiplas. Métricas de diversidade genética foram estimadas e alelos nulos foram detectados. Análise da Variância Molecular e análise do número de clusters foram utilizados para descrever a relação entre os estoques. Resultados: Dois marcadores não foram amplificados e vinte e dois microssatélites analisados mostraram-se polimórficos. O número médio de alelos por locus variou entre 5,77 e 7,91. O Locus UNH211 apresentou o maior número de alelos (17), enquanto o OMO032 apresentou o menor número (4). Exceto GM234 e OMO032, os loci analisados mostrou um pelo menos um alelo privado por população. O número efetivo médio de alelos (3,37-4,03) foi sempre menor do que o número de alelos observados. Foram observados desvios significativos do equilíbrio Hardy-Weinberg e deficiência de heterozigotos. Nove loci mostraram evidências de alelos nulos. A heterozigosidade esperada (0,6504-0,6748 por população) foi significativamente maior do que a heterozigosidade observada (0,601-0,649). O índice de fixação foi de 0,0766 (intervalo de confiança de 95%, 0,05092-0,10289). De acordo com a análise da variância molecular, a maior variação foi entre indivíduos. Adistância genética entre o Nilo e os reprodutores vermelhos variou de 0,43 a 0,54. Conclusão: No geral, esses resultados fornecem informação básica sobre sobre diversidade e estrutura genética de reprodutores de tilápia em Antioquia, Colômbia, e são significativos para o manejo de plantéis de reprodutores.COL006656115application/pdfengUniversidad de Antioquia, Facultad de Ciencias AgrariasMedellín, Colombiahttps://creativecommons.org/licenses/by-nc-sa/2.5/co/https://creativecommons.org/licenses/by-nc-sa/4.0/Atribución-NoComercial-CompartirIgual 2.5 Colombia (CC BY-NC-SA 2.5 CO)info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Genetic diversity of four broodstocks of Tilapia (Oreochromis Sp.) from Antioquia, ColombiaDiversidad genética de cuatro grupos de reproductores de tilapia (Oreochromis sp.) de Antioquia, ColombiaDiversidade genética de quatro estoques de reprodutores de tilápia (Oreochromis sp.) de Antioquia, ColombiaArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionPeces - ColombiaRev. Colomb. Cienc. Pecu.213320132Revista Colombiana de Ciencias PecuariasPublicationORIGINALMontoyaAndres_2019_GeneticDiversityBroodstocksTilapia.pdfMontoyaAndres_2019_GeneticDiversityBroodstocksTilapia.pdfArtículo de investigaciónapplication/pdf506472https://bibliotecadigital.udea.edu.co/bitstreams/5a53e360-6a13-4be8-940d-c29292fa3189/download91281d92c771a8062696baa96be99c7aMD51trueAnonymousREADCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8823https://bibliotecadigital.udea.edu.co/bitstreams/3d770a5f-746f-49a2-89ec-df51cf5e848c/downloadb88b088d9957e670ce3b3fbe2eedbc13MD52falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/ddd530d2-7b40-4982-a9cd-b217b1e4e000/download8a4605be74aa9ea9d79846c1fba20a33MD53falseAnonymousREADTEXTMontoyaAndres_2019_GeneticDiversityBroodstocksTilapia.pdf.txtMontoyaAndres_2019_GeneticDiversityBroodstocksTilapia.pdf.txtExtracted texttext/plain41284https://bibliotecadigital.udea.edu.co/bitstreams/61cdd702-cbf3-4067-9825-1b16378e6e89/downloadf95f8d603c3ff1e78f0a3c5af485f577MD54falseAnonymousREADTHUMBNAILMontoyaAndres_2019_GeneticDiversityBroodstocksTilapia.pdf.jpgMontoyaAndres_2019_GeneticDiversityBroodstocksTilapia.pdf.jpgGenerated Thumbnailimage/jpeg9024https://bibliotecadigital.udea.edu.co/bitstreams/7ce6a656-5b06-47c7-a4a8-9eca473dbc1f/downloadb451c0ed98efad53cbb2e3d53b5206cbMD55falseAnonymousREAD10495/14073oai:bibliotecadigital.udea.edu.co:10495/140732025-03-27 00:28:50.934https://creativecommons.org/licenses/by-nc-sa/2.5/co/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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