Comparative analysis of strategies for de novo transcriptome assembly in prokaryotes: streptomyces clavuligerus as a case study

The performance of software tools for de novo transcriptome assembly greatly depends on the selection of software parameters. Up to now, the development of de novo transcriptome assembly for prokaryotes has not been as remarkable as that for eukaryotes. In this contribution, Rockhopper2 was used to...

Full description

Autores:

Ríos Estepa, Rigoberto
Caicedo Montoya, Carlos Andrés
Yepes García, Jeferyd
Pinilla Mendoza, Laura Inés
Toro Navarro, León Felipe

Tipo de recurso:

Article of investigation

Fecha de publicación:

2019

Institución:

Universidad de Antioquia

Repositorio:

Repositorio UdeA

Idioma:

eng

OAI Identifier:

oai:bibliotecadigital.udea.edu.co:10495/46035

Acceso en línea:

https://hdl.handle.net/10495/46035

Palabra clave:

Secuenciación de Nucleótidos de Alto Rendimiento
High-Throughput Nucleotide Sequencing
Streptomyces
Células Procariotas
Prokaryotic Cells
Transcriptoma
Transcriptome
Trinity
Trinity (Software)
https://id.nlm.nih.gov/mesh/D059014
https://id.nlm.nih.gov/mesh/D013302
https://id.nlm.nih.gov/mesh/D011387
https://id.nlm.nih.gov/mesh/D059467

Rights

openAccess

License

http://creativecommons.org/licenses/by/4.0/