Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia

ABSTARCT: Hepatitis B Virus (HBV) infection is a worldwide public health problem. In the 1980's a highly effective and safe vaccine against HBV was developed, although breakthrough infection still occasionally occurs because of the emergence of escape mutants. The aim of this study was to ident...

Full description

Autores:
Jaramillo Ospina, Carlos Mario
De La Hoz Restrepo, Fernando
Porras, Alexandra
di Filippo Villa, Diana Carolina
Choconta Piraquive, Luz Angela
Payares, Edra
Montes, Neyla
Navas Navas, María Cristina
Tipo de recurso:
Article of investigation
Fecha de publicación:
2017
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/11847
Acceso en línea:
http://hdl.handle.net/10495/11847
Palabra clave:
Genoma viral
Hepatitis B
Infección por el Virus de la Hepatitis B
Virus de la Hepatitis
ADN Viral
Rights
openAccess
License
https://creativecommons.org/licenses/by/4.0/
id UDEA2_ebfddecf9285281b9c401c466b9e3531
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/11847
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
title Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
spellingShingle Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
Genoma viral
Hepatitis B
Infección por el Virus de la Hepatitis B
Virus de la Hepatitis
ADN Viral
title_short Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
title_full Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
title_fullStr Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
title_full_unstemmed Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
title_sort Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
dc.creator.fl_str_mv Jaramillo Ospina, Carlos Mario
De La Hoz Restrepo, Fernando
Porras, Alexandra
di Filippo Villa, Diana Carolina
Choconta Piraquive, Luz Angela
Payares, Edra
Montes, Neyla
Navas Navas, María Cristina
dc.contributor.author.none.fl_str_mv Jaramillo Ospina, Carlos Mario
De La Hoz Restrepo, Fernando
Porras, Alexandra
di Filippo Villa, Diana Carolina
Choconta Piraquive, Luz Angela
Payares, Edra
Montes, Neyla
Navas Navas, María Cristina
dc.contributor.researchgroup.spa.fl_str_mv Grupo de Gastrohepatología
dc.subject.none.fl_str_mv Genoma viral
Hepatitis B
Infección por el Virus de la Hepatitis B
Virus de la Hepatitis
ADN Viral
topic Genoma viral
Hepatitis B
Infección por el Virus de la Hepatitis B
Virus de la Hepatitis
ADN Viral
description ABSTARCT: Hepatitis B Virus (HBV) infection is a worldwide public health problem. In the 1980's a highly effective and safe vaccine against HBV was developed, although breakthrough infection still occasionally occurs because of the emergence of escape mutants. The aim of this study was to identify HBV genotypes and escape mutants in children and their mothers in Amerindian communities of the Amazonas State, Southern Colombia. METHODS: Blood specimens collected from children and mothers belonging to 37 Amerindian communities in Amazonas state, were screened for HBsAg and anti-HBc using ELISA. The partial region containing the S ORF was amplified by nested PCR, and amplicons were sequenced. The phylogenetic analysis was performed using the MEGA 5.05 software. RESULTS: Forty-six children (46/1275, 3.6%) and one hundred and seventy-seven mothers (177/572, 30.9%) were tested positive for the anti-HBc serological marker. Among them, 190 samples were tested for viral genome detection; 8.3% (2/31) serum samples obtained from children and 3.1% (5/159) from mothers were positive for the ORF S PCR. The predominant HBV genotype in the study population was F, subgenotype F1b; in addition, subgenotype F1a and genotype A were also characterized. Two HBV escape mutants were identified, G145R, reported worldwide, and W156*; this stop codon was identified in a child with occult HBV infection. Other mutations were found, L109R and G130E, located in critical positions of the HBsAg sequence. CONCLUSIONS: This study aimed to characterize the HBV genotype F, subgenotypes F1b and F1a, and genotype A in Amerindian communities and for the first time escape mutants in Colombia. Further investigations are necessary to elucidate the frequency and the epidemiological impact of the escape mutants in the country.
publishDate 2017
dc.date.issued.none.fl_str_mv 2017
dc.date.accessioned.none.fl_str_mv 2019-08-26T16:36:46Z
dc.date.available.none.fl_str_mv 2019-08-26T16:36:46Z
dc.type.spa.fl_str_mv Artículo de investigación
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.redcol.spa.fl_str_mv https://purl.org/redcol/resource_type/ART
dc.type.coarversion.spa.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/publishedVersion
format http://purl.org/coar/resource_type/c_2df8fbb1
status_str publishedVersion
dc.identifier.citation.spa.fl_str_mv Jaramillo CM, de La Hoz F, Porras A, di Filippo D, Choconta-Piraquive LA, Payares E, Montes N, Navas MC. Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia. PLoS One. 2017 Oct 10;12(10):e0181643
dc.identifier.issn.none.fl_str_mv 1932-6203
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/10495/11847
dc.identifier.doi.none.fl_str_mv 10.1371/journal.pone.0181643
identifier_str_mv Jaramillo CM, de La Hoz F, Porras A, di Filippo D, Choconta-Piraquive LA, Payares E, Montes N, Navas MC. Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia. PLoS One. 2017 Oct 10;12(10):e0181643
1932-6203
10.1371/journal.pone.0181643
url http://hdl.handle.net/10495/11847
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv PLoS One.
dc.relation.citationendpage.spa.fl_str_mv 15
dc.relation.citationissue.spa.fl_str_mv 10
dc.relation.citationstartpage.spa.fl_str_mv 1
dc.relation.citationvolume.spa.fl_str_mv 12
dc.relation.ispartofjournal.spa.fl_str_mv PLoS One
dc.rights.uri.spa.fl_str_mv https://creativecommons.org/licenses/by/4.0/
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by/2.5/co/
dc.rights.accessrights.*.fl_str_mv Atribución 2.5
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0/
http://creativecommons.org/licenses/by/2.5/co/
Atribución 2.5
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.spa.fl_str_mv 14
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Public Library of Science
dc.publisher.place.spa.fl_str_mv San Francisco, Estados Unidos
institution Universidad de Antioquia
bitstream.url.fl_str_mv https://bibliotecadigital.udea.edu.co/bitstreams/a7625f48-f5bd-4907-a795-4dc6ea296151/download
https://bibliotecadigital.udea.edu.co/bitstreams/2de64403-ed39-4dae-84ca-b38308dbf22f/download
https://bibliotecadigital.udea.edu.co/bitstreams/03b01bf2-5546-497a-85b9-7cc05ff7cf7e/download
https://bibliotecadigital.udea.edu.co/bitstreams/935ebfa1-64ad-4fa8-8f4b-9c5d16f076e5/download
https://bibliotecadigital.udea.edu.co/bitstreams/7c107d8c-51c2-4cc4-850c-5f535ab5a5e4/download
https://bibliotecadigital.udea.edu.co/bitstreams/0123188b-3be6-45c6-ab6f-86a11d2819a0/download
https://bibliotecadigital.udea.edu.co/bitstreams/184d5e6e-004b-41bf-be9b-af3d2022ddf2/download
bitstream.checksum.fl_str_mv 4eb414da79d1e7cb88b44196e424bc26
4afdbb8c545fd630ea7db775da747b2f
d41d8cd98f00b204e9800998ecf8427e
d41d8cd98f00b204e9800998ecf8427e
8a4605be74aa9ea9d79846c1fba20a33
f79f16e4bbb40fcf8775bb79994cf21f
b47591e9f3a4d3ec783d853237a71939
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional de la Universidad de Antioquia
repository.mail.fl_str_mv aplicacionbibliotecadigitalbiblioteca@udea.edu.co
_version_ 1851052619078828032
spelling Jaramillo Ospina, Carlos MarioDe La Hoz Restrepo, FernandoPorras, Alexandradi Filippo Villa, Diana CarolinaChoconta Piraquive, Luz AngelaPayares, EdraMontes, NeylaNavas Navas, María CristinaGrupo de Gastrohepatología2019-08-26T16:36:46Z2019-08-26T16:36:46Z2017Jaramillo CM, de La Hoz F, Porras A, di Filippo D, Choconta-Piraquive LA, Payares E, Montes N, Navas MC. Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia. PLoS One. 2017 Oct 10;12(10):e01816431932-6203http://hdl.handle.net/10495/1184710.1371/journal.pone.0181643ABSTARCT: Hepatitis B Virus (HBV) infection is a worldwide public health problem. In the 1980's a highly effective and safe vaccine against HBV was developed, although breakthrough infection still occasionally occurs because of the emergence of escape mutants. The aim of this study was to identify HBV genotypes and escape mutants in children and their mothers in Amerindian communities of the Amazonas State, Southern Colombia. METHODS: Blood specimens collected from children and mothers belonging to 37 Amerindian communities in Amazonas state, were screened for HBsAg and anti-HBc using ELISA. The partial region containing the S ORF was amplified by nested PCR, and amplicons were sequenced. The phylogenetic analysis was performed using the MEGA 5.05 software. RESULTS: Forty-six children (46/1275, 3.6%) and one hundred and seventy-seven mothers (177/572, 30.9%) were tested positive for the anti-HBc serological marker. Among them, 190 samples were tested for viral genome detection; 8.3% (2/31) serum samples obtained from children and 3.1% (5/159) from mothers were positive for the ORF S PCR. The predominant HBV genotype in the study population was F, subgenotype F1b; in addition, subgenotype F1a and genotype A were also characterized. Two HBV escape mutants were identified, G145R, reported worldwide, and W156*; this stop codon was identified in a child with occult HBV infection. Other mutations were found, L109R and G130E, located in critical positions of the HBsAg sequence. CONCLUSIONS: This study aimed to characterize the HBV genotype F, subgenotypes F1b and F1a, and genotype A in Amerindian communities and for the first time escape mutants in Colombia. Further investigations are necessary to elucidate the frequency and the epidemiological impact of the escape mutants in the country.COL002415914application/pdfengPublic Library of ScienceSan Francisco, Estados Unidoshttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/Atribución 2.5info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Genoma viralHepatitis BInfección por el Virus de la Hepatitis BVirus de la HepatitisADN ViralCharacterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, ColombiaArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionPLoS One.1510112PLoS OnePublicationORIGINALJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdfJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdfArtículo de investigaciónapplication/pdf1464690https://bibliotecadigital.udea.edu.co/bitstreams/a7625f48-f5bd-4907-a795-4dc6ea296151/download4eb414da79d1e7cb88b44196e424bc26MD51trueAnonymousREADCC-LICENSElicense_urllicense_urltext/plain; charset=utf-849https://bibliotecadigital.udea.edu.co/bitstreams/2de64403-ed39-4dae-84ca-b38308dbf22f/download4afdbb8c545fd630ea7db775da747b2fMD52falseAnonymousREADlicense_textlicense_texttext/html; charset=utf-80https://bibliotecadigital.udea.edu.co/bitstreams/03b01bf2-5546-497a-85b9-7cc05ff7cf7e/downloadd41d8cd98f00b204e9800998ecf8427eMD53falseAnonymousREADlicense_rdflicense_rdfapplication/rdf+xml; charset=utf-80https://bibliotecadigital.udea.edu.co/bitstreams/935ebfa1-64ad-4fa8-8f4b-9c5d16f076e5/downloadd41d8cd98f00b204e9800998ecf8427eMD54falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/7c107d8c-51c2-4cc4-850c-5f535ab5a5e4/download8a4605be74aa9ea9d79846c1fba20a33MD55falseAnonymousREADTEXTJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.txtJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.txtExtracted texttext/plain60353https://bibliotecadigital.udea.edu.co/bitstreams/0123188b-3be6-45c6-ab6f-86a11d2819a0/downloadf79f16e4bbb40fcf8775bb79994cf21fMD56falseAnonymousREADTHUMBNAILJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.jpgJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.jpgGenerated Thumbnailimage/jpeg15082https://bibliotecadigital.udea.edu.co/bitstreams/184d5e6e-004b-41bf-be9b-af3d2022ddf2/downloadb47591e9f3a4d3ec783d853237a71939MD57falseAnonymousREAD10495/11847oai:bibliotecadigital.udea.edu.co:10495/118472025-03-27 01:10:07.86https://creativecommons.org/licenses/by/4.0/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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