Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia
ABSTARCT: Hepatitis B Virus (HBV) infection is a worldwide public health problem. In the 1980's a highly effective and safe vaccine against HBV was developed, although breakthrough infection still occasionally occurs because of the emergence of escape mutants. The aim of this study was to ident...
- Autores:
-
Jaramillo Ospina, Carlos Mario
De La Hoz Restrepo, Fernando
Porras, Alexandra
di Filippo Villa, Diana Carolina
Choconta Piraquive, Luz Angela
Payares, Edra
Montes, Neyla
Navas Navas, María Cristina
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2017
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/11847
- Acceso en línea:
- http://hdl.handle.net/10495/11847
- Palabra clave:
- Genoma viral
Hepatitis B
Infección por el Virus de la Hepatitis B
Virus de la Hepatitis
ADN Viral
- Rights
- openAccess
- License
- https://creativecommons.org/licenses/by/4.0/
| id |
UDEA2_ebfddecf9285281b9c401c466b9e3531 |
|---|---|
| oai_identifier_str |
oai:bibliotecadigital.udea.edu.co:10495/11847 |
| network_acronym_str |
UDEA2 |
| network_name_str |
Repositorio UdeA |
| repository_id_str |
|
| dc.title.spa.fl_str_mv |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| title |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| spellingShingle |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia Genoma viral Hepatitis B Infección por el Virus de la Hepatitis B Virus de la Hepatitis ADN Viral |
| title_short |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| title_full |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| title_fullStr |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| title_full_unstemmed |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| title_sort |
Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia |
| dc.creator.fl_str_mv |
Jaramillo Ospina, Carlos Mario De La Hoz Restrepo, Fernando Porras, Alexandra di Filippo Villa, Diana Carolina Choconta Piraquive, Luz Angela Payares, Edra Montes, Neyla Navas Navas, María Cristina |
| dc.contributor.author.none.fl_str_mv |
Jaramillo Ospina, Carlos Mario De La Hoz Restrepo, Fernando Porras, Alexandra di Filippo Villa, Diana Carolina Choconta Piraquive, Luz Angela Payares, Edra Montes, Neyla Navas Navas, María Cristina |
| dc.contributor.researchgroup.spa.fl_str_mv |
Grupo de Gastrohepatología |
| dc.subject.none.fl_str_mv |
Genoma viral Hepatitis B Infección por el Virus de la Hepatitis B Virus de la Hepatitis ADN Viral |
| topic |
Genoma viral Hepatitis B Infección por el Virus de la Hepatitis B Virus de la Hepatitis ADN Viral |
| description |
ABSTARCT: Hepatitis B Virus (HBV) infection is a worldwide public health problem. In the 1980's a highly effective and safe vaccine against HBV was developed, although breakthrough infection still occasionally occurs because of the emergence of escape mutants. The aim of this study was to identify HBV genotypes and escape mutants in children and their mothers in Amerindian communities of the Amazonas State, Southern Colombia. METHODS: Blood specimens collected from children and mothers belonging to 37 Amerindian communities in Amazonas state, were screened for HBsAg and anti-HBc using ELISA. The partial region containing the S ORF was amplified by nested PCR, and amplicons were sequenced. The phylogenetic analysis was performed using the MEGA 5.05 software. RESULTS: Forty-six children (46/1275, 3.6%) and one hundred and seventy-seven mothers (177/572, 30.9%) were tested positive for the anti-HBc serological marker. Among them, 190 samples were tested for viral genome detection; 8.3% (2/31) serum samples obtained from children and 3.1% (5/159) from mothers were positive for the ORF S PCR. The predominant HBV genotype in the study population was F, subgenotype F1b; in addition, subgenotype F1a and genotype A were also characterized. Two HBV escape mutants were identified, G145R, reported worldwide, and W156*; this stop codon was identified in a child with occult HBV infection. Other mutations were found, L109R and G130E, located in critical positions of the HBsAg sequence. CONCLUSIONS: This study aimed to characterize the HBV genotype F, subgenotypes F1b and F1a, and genotype A in Amerindian communities and for the first time escape mutants in Colombia. Further investigations are necessary to elucidate the frequency and the epidemiological impact of the escape mutants in the country. |
| publishDate |
2017 |
| dc.date.issued.none.fl_str_mv |
2017 |
| dc.date.accessioned.none.fl_str_mv |
2019-08-26T16:36:46Z |
| dc.date.available.none.fl_str_mv |
2019-08-26T16:36:46Z |
| dc.type.spa.fl_str_mv |
Artículo de investigación |
| dc.type.coar.spa.fl_str_mv |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.type.redcol.spa.fl_str_mv |
https://purl.org/redcol/resource_type/ART |
| dc.type.coarversion.spa.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.driver.spa.fl_str_mv |
info:eu-repo/semantics/article |
| dc.type.version.spa.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| format |
http://purl.org/coar/resource_type/c_2df8fbb1 |
| status_str |
publishedVersion |
| dc.identifier.citation.spa.fl_str_mv |
Jaramillo CM, de La Hoz F, Porras A, di Filippo D, Choconta-Piraquive LA, Payares E, Montes N, Navas MC. Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia. PLoS One. 2017 Oct 10;12(10):e0181643 |
| dc.identifier.issn.none.fl_str_mv |
1932-6203 |
| dc.identifier.uri.none.fl_str_mv |
http://hdl.handle.net/10495/11847 |
| dc.identifier.doi.none.fl_str_mv |
10.1371/journal.pone.0181643 |
| identifier_str_mv |
Jaramillo CM, de La Hoz F, Porras A, di Filippo D, Choconta-Piraquive LA, Payares E, Montes N, Navas MC. Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia. PLoS One. 2017 Oct 10;12(10):e0181643 1932-6203 10.1371/journal.pone.0181643 |
| url |
http://hdl.handle.net/10495/11847 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
PLoS One. |
| dc.relation.citationendpage.spa.fl_str_mv |
15 |
| dc.relation.citationissue.spa.fl_str_mv |
10 |
| dc.relation.citationstartpage.spa.fl_str_mv |
1 |
| dc.relation.citationvolume.spa.fl_str_mv |
12 |
| dc.relation.ispartofjournal.spa.fl_str_mv |
PLoS One |
| dc.rights.uri.spa.fl_str_mv |
https://creativecommons.org/licenses/by/4.0/ |
| dc.rights.uri.*.fl_str_mv |
http://creativecommons.org/licenses/by/2.5/co/ |
| dc.rights.accessrights.*.fl_str_mv |
Atribución 2.5 |
| dc.rights.accessrights.spa.fl_str_mv |
info:eu-repo/semantics/openAccess |
| dc.rights.coar.spa.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
| rights_invalid_str_mv |
https://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/2.5/co/ Atribución 2.5 http://purl.org/coar/access_right/c_abf2 |
| eu_rights_str_mv |
openAccess |
| dc.format.extent.spa.fl_str_mv |
14 |
| dc.format.mimetype.spa.fl_str_mv |
application/pdf |
| dc.publisher.spa.fl_str_mv |
Public Library of Science |
| dc.publisher.place.spa.fl_str_mv |
San Francisco, Estados Unidos |
| institution |
Universidad de Antioquia |
| bitstream.url.fl_str_mv |
https://bibliotecadigital.udea.edu.co/bitstreams/a7625f48-f5bd-4907-a795-4dc6ea296151/download https://bibliotecadigital.udea.edu.co/bitstreams/2de64403-ed39-4dae-84ca-b38308dbf22f/download https://bibliotecadigital.udea.edu.co/bitstreams/03b01bf2-5546-497a-85b9-7cc05ff7cf7e/download https://bibliotecadigital.udea.edu.co/bitstreams/935ebfa1-64ad-4fa8-8f4b-9c5d16f076e5/download https://bibliotecadigital.udea.edu.co/bitstreams/7c107d8c-51c2-4cc4-850c-5f535ab5a5e4/download https://bibliotecadigital.udea.edu.co/bitstreams/0123188b-3be6-45c6-ab6f-86a11d2819a0/download https://bibliotecadigital.udea.edu.co/bitstreams/184d5e6e-004b-41bf-be9b-af3d2022ddf2/download |
| bitstream.checksum.fl_str_mv |
4eb414da79d1e7cb88b44196e424bc26 4afdbb8c545fd630ea7db775da747b2f d41d8cd98f00b204e9800998ecf8427e d41d8cd98f00b204e9800998ecf8427e 8a4605be74aa9ea9d79846c1fba20a33 f79f16e4bbb40fcf8775bb79994cf21f b47591e9f3a4d3ec783d853237a71939 |
| bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositorio Institucional de la Universidad de Antioquia |
| repository.mail.fl_str_mv |
aplicacionbibliotecadigitalbiblioteca@udea.edu.co |
| _version_ |
1851052619078828032 |
| spelling |
Jaramillo Ospina, Carlos MarioDe La Hoz Restrepo, FernandoPorras, Alexandradi Filippo Villa, Diana CarolinaChoconta Piraquive, Luz AngelaPayares, EdraMontes, NeylaNavas Navas, María CristinaGrupo de Gastrohepatología2019-08-26T16:36:46Z2019-08-26T16:36:46Z2017Jaramillo CM, de La Hoz F, Porras A, di Filippo D, Choconta-Piraquive LA, Payares E, Montes N, Navas MC. Characterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, Colombia. PLoS One. 2017 Oct 10;12(10):e01816431932-6203http://hdl.handle.net/10495/1184710.1371/journal.pone.0181643ABSTARCT: Hepatitis B Virus (HBV) infection is a worldwide public health problem. In the 1980's a highly effective and safe vaccine against HBV was developed, although breakthrough infection still occasionally occurs because of the emergence of escape mutants. The aim of this study was to identify HBV genotypes and escape mutants in children and their mothers in Amerindian communities of the Amazonas State, Southern Colombia. METHODS: Blood specimens collected from children and mothers belonging to 37 Amerindian communities in Amazonas state, were screened for HBsAg and anti-HBc using ELISA. The partial region containing the S ORF was amplified by nested PCR, and amplicons were sequenced. The phylogenetic analysis was performed using the MEGA 5.05 software. RESULTS: Forty-six children (46/1275, 3.6%) and one hundred and seventy-seven mothers (177/572, 30.9%) were tested positive for the anti-HBc serological marker. Among them, 190 samples were tested for viral genome detection; 8.3% (2/31) serum samples obtained from children and 3.1% (5/159) from mothers were positive for the ORF S PCR. The predominant HBV genotype in the study population was F, subgenotype F1b; in addition, subgenotype F1a and genotype A were also characterized. Two HBV escape mutants were identified, G145R, reported worldwide, and W156*; this stop codon was identified in a child with occult HBV infection. Other mutations were found, L109R and G130E, located in critical positions of the HBsAg sequence. CONCLUSIONS: This study aimed to characterize the HBV genotype F, subgenotypes F1b and F1a, and genotype A in Amerindian communities and for the first time escape mutants in Colombia. Further investigations are necessary to elucidate the frequency and the epidemiological impact of the escape mutants in the country.COL002415914application/pdfengPublic Library of ScienceSan Francisco, Estados Unidoshttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/Atribución 2.5info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Genoma viralHepatitis BInfección por el Virus de la Hepatitis BVirus de la HepatitisADN ViralCharacterization of hepatitis B virus in Amerindian children and mothers from Amazonas State, ColombiaArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionPLoS One.1510112PLoS OnePublicationORIGINALJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdfJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdfArtículo de investigaciónapplication/pdf1464690https://bibliotecadigital.udea.edu.co/bitstreams/a7625f48-f5bd-4907-a795-4dc6ea296151/download4eb414da79d1e7cb88b44196e424bc26MD51trueAnonymousREADCC-LICENSElicense_urllicense_urltext/plain; charset=utf-849https://bibliotecadigital.udea.edu.co/bitstreams/2de64403-ed39-4dae-84ca-b38308dbf22f/download4afdbb8c545fd630ea7db775da747b2fMD52falseAnonymousREADlicense_textlicense_texttext/html; charset=utf-80https://bibliotecadigital.udea.edu.co/bitstreams/03b01bf2-5546-497a-85b9-7cc05ff7cf7e/downloadd41d8cd98f00b204e9800998ecf8427eMD53falseAnonymousREADlicense_rdflicense_rdfapplication/rdf+xml; charset=utf-80https://bibliotecadigital.udea.edu.co/bitstreams/935ebfa1-64ad-4fa8-8f4b-9c5d16f076e5/downloadd41d8cd98f00b204e9800998ecf8427eMD54falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/7c107d8c-51c2-4cc4-850c-5f535ab5a5e4/download8a4605be74aa9ea9d79846c1fba20a33MD55falseAnonymousREADTEXTJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.txtJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.txtExtracted texttext/plain60353https://bibliotecadigital.udea.edu.co/bitstreams/0123188b-3be6-45c6-ab6f-86a11d2819a0/downloadf79f16e4bbb40fcf8775bb79994cf21fMD56falseAnonymousREADTHUMBNAILJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.jpgJaramilloCarlosMario_2017_CharacterizationHepatitisBAmerindian.pdf.jpgGenerated Thumbnailimage/jpeg15082https://bibliotecadigital.udea.edu.co/bitstreams/184d5e6e-004b-41bf-be9b-af3d2022ddf2/downloadb47591e9f3a4d3ec783d853237a71939MD57falseAnonymousREAD10495/11847oai:bibliotecadigital.udea.edu.co:10495/118472025-03-27 01:10:07.86https://creativecommons.org/licenses/by/4.0/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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 |
