Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
ABSTRACT: The mithocondria distribution (MD) around nuclei is dynamically changing through clustering, fusion and fission of organelles [1], so the MD takes an appropiated form for each of the different cell functions [2]. Then it is expected that such distribution gets modified when the cell is und...
- Autores:
-
Gallego Gómez, Juan Carlos
Cardona Gómez, Juan Carlos
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2016
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/38531
- Acceso en línea:
- https://hdl.handle.net/10495/38531
- Palabra clave:
- Mitocondrias
Mitochondria
Virus del dengue
Dengue viruses
Cultivo de células
Cell culture
https://id.nlm.nih.gov/mesh/D008928
- Rights
- openAccess
- License
- https://creativecommons.org/licenses/by/4.0/
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Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| title |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| spellingShingle |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells Mitocondrias Mitochondria Virus del dengue Dengue viruses Cultivo de células Cell culture https://id.nlm.nih.gov/mesh/D008928 |
| title_short |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| title_full |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| title_fullStr |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| title_full_unstemmed |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| title_sort |
Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells |
| dc.creator.fl_str_mv |
Gallego Gómez, Juan Carlos Cardona Gómez, Juan Carlos |
| dc.contributor.author.none.fl_str_mv |
Gallego Gómez, Juan Carlos Cardona Gómez, Juan Carlos |
| dc.contributor.researchgroup.spa.fl_str_mv |
Grupo Medicina Molecular y de Translación |
| dc.subject.decs.none.fl_str_mv |
Mitocondrias Mitochondria |
| topic |
Mitocondrias Mitochondria Virus del dengue Dengue viruses Cultivo de células Cell culture https://id.nlm.nih.gov/mesh/D008928 |
| dc.subject.lemb.none.fl_str_mv |
Virus del dengue Dengue viruses Cultivo de células Cell culture |
| dc.subject.meshuri.none.fl_str_mv |
https://id.nlm.nih.gov/mesh/D008928 |
| description |
ABSTRACT: The mithocondria distribution (MD) around nuclei is dynamically changing through clustering, fusion and fission of organelles [1], so the MD takes an appropiated form for each of the different cell functions [2]. Then it is expected that such distribution gets modified when the cell is under viral infection. To study such changes, several videos were taken through a set of live cell imaging experiments on cell cultures expressing fluorescent mithocondria of both: healthy (mock) and infected cells with Dengue Virus (DENV). The fluorescent organelles cluster in regions that shows up to be brighter where the MD is higher, then MD would be extracted from each frame as proportional to the brightness of the picture. Each experiment has follow standard protocols that provide approximately the same initial state for each cell of the same kind (mock or infected). As any studied cell starts from a different pattern of MD around the nuclei, it is expected for each one of those patterns to be equally likely, then the MD density can be approximated as the average of MD in each frame. Each MD has been modeled through a numerical function build as a two dimensional interpolation of the intensity levels, by using a bivariate b-splines method. Each cell has been modeled as an ellipsis, so the MD density function ρ is a function of the distance to the nuclei center r, the angle from major semi axis θ and time t. By carefully looking at ρ(r, θ, t) at fixed θ or fixed r (figure 1), it is clear that the distribution for infected cells has less defined clusters as shown by having more oscillations and lesser distance between peaks and background. Which means a more disorganized structure. This fact can be used to define a classifier for healthy or infected cells [3]. In this work, a proposal of a quantitative tool to measure the order or disorder on the MD is presented. |
| publishDate |
2016 |
| dc.date.issued.none.fl_str_mv |
2016 |
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2024-03-11T14:56:35Z |
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2024-03-11T14:56:35Z |
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Artículo de investigación |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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Cardona JC, Gallego-Gomez JC. Quantitative study of the differences in mithocondrium distribution between DENV infected and mock cells. AIP Conf Proc [Internet]. 2016;1747(1):90005. Disponible en: https://doi.org/10.1063/1.4954138 |
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0094-243X |
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https://hdl.handle.net/10495/38531 |
| dc.identifier.doi.none.fl_str_mv |
10.1063/1.4954138 |
| dc.identifier.eissn.none.fl_str_mv |
1551-7616 |
| identifier_str_mv |
Cardona JC, Gallego-Gomez JC. Quantitative study of the differences in mithocondrium distribution between DENV infected and mock cells. AIP Conf Proc [Internet]. 2016;1747(1):90005. Disponible en: https://doi.org/10.1063/1.4954138 0094-243X 10.1063/1.4954138 1551-7616 |
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https://hdl.handle.net/10495/38531 |
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eng |
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eng |
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AIP Conf. Proc. |
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5 |
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1 |
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1 |
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1747 |
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Aip Conference Proceedings |
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American Institute of Physics |
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Gallego Gómez, Juan CarlosCardona Gómez, Juan CarlosGrupo Medicina Molecular y de Translación2024-03-11T14:56:35Z2024-03-11T14:56:35Z2016Cardona JC, Gallego-Gomez JC. Quantitative study of the differences in mithocondrium distribution between DENV infected and mock cells. AIP Conf Proc [Internet]. 2016;1747(1):90005. Disponible en: https://doi.org/10.1063/1.49541380094-243Xhttps://hdl.handle.net/10495/3853110.1063/1.49541381551-7616ABSTRACT: The mithocondria distribution (MD) around nuclei is dynamically changing through clustering, fusion and fission of organelles [1], so the MD takes an appropiated form for each of the different cell functions [2]. Then it is expected that such distribution gets modified when the cell is under viral infection. To study such changes, several videos were taken through a set of live cell imaging experiments on cell cultures expressing fluorescent mithocondria of both: healthy (mock) and infected cells with Dengue Virus (DENV). The fluorescent organelles cluster in regions that shows up to be brighter where the MD is higher, then MD would be extracted from each frame as proportional to the brightness of the picture. Each experiment has follow standard protocols that provide approximately the same initial state for each cell of the same kind (mock or infected). As any studied cell starts from a different pattern of MD around the nuclei, it is expected for each one of those patterns to be equally likely, then the MD density can be approximated as the average of MD in each frame. Each MD has been modeled through a numerical function build as a two dimensional interpolation of the intensity levels, by using a bivariate b-splines method. Each cell has been modeled as an ellipsis, so the MD density function ρ is a function of the distance to the nuclei center r, the angle from major semi axis θ and time t. By carefully looking at ρ(r, θ, t) at fixed θ or fixed r (figure 1), it is clear that the distribution for infected cells has less defined clusters as shown by having more oscillations and lesser distance between peaks and background. Which means a more disorganized structure. This fact can be used to define a classifier for healthy or infected cells [3]. In this work, a proposal of a quantitative tool to measure the order or disorder on the MD is presented.Colombia. Ministerio de Ciencia, Tecnología e InnovaciónCOL01401395 páginasapplication/pdfengAmerican Institute of PhysicsNueva York, Estados Unidoshttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock CellsArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionMitocondriasMitochondriaVirus del dengueDengue virusesCultivo de célulasCell culturehttps://id.nlm.nih.gov/mesh/D008928AIP Conf. 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