Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells

ABSTRACT: The mithocondria distribution (MD) around nuclei is dynamically changing through clustering, fusion and fission of organelles [1], so the MD takes an appropiated form for each of the different cell functions [2]. Then it is expected that such distribution gets modified when the cell is und...

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Autores:
Gallego Gómez, Juan Carlos
Cardona Gómez, Juan Carlos
Tipo de recurso:
Article of investigation
Fecha de publicación:
2016
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/38531
Acceso en línea:
https://hdl.handle.net/10495/38531
Palabra clave:
Mitocondrias
Mitochondria
Virus del dengue
Dengue viruses
Cultivo de células
Cell culture
https://id.nlm.nih.gov/mesh/D008928
Rights
openAccess
License
https://creativecommons.org/licenses/by/4.0/
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dc.title.spa.fl_str_mv Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
title Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
spellingShingle Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
Mitocondrias
Mitochondria
Virus del dengue
Dengue viruses
Cultivo de células
Cell culture
https://id.nlm.nih.gov/mesh/D008928
title_short Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
title_full Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
title_fullStr Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
title_full_unstemmed Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
title_sort Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock Cells
dc.creator.fl_str_mv Gallego Gómez, Juan Carlos
Cardona Gómez, Juan Carlos
dc.contributor.author.none.fl_str_mv Gallego Gómez, Juan Carlos
Cardona Gómez, Juan Carlos
dc.contributor.researchgroup.spa.fl_str_mv Grupo Medicina Molecular y de Translación
dc.subject.decs.none.fl_str_mv Mitocondrias
Mitochondria
topic Mitocondrias
Mitochondria
Virus del dengue
Dengue viruses
Cultivo de células
Cell culture
https://id.nlm.nih.gov/mesh/D008928
dc.subject.lemb.none.fl_str_mv Virus del dengue
Dengue viruses
Cultivo de células
Cell culture
dc.subject.meshuri.none.fl_str_mv https://id.nlm.nih.gov/mesh/D008928
description ABSTRACT: The mithocondria distribution (MD) around nuclei is dynamically changing through clustering, fusion and fission of organelles [1], so the MD takes an appropiated form for each of the different cell functions [2]. Then it is expected that such distribution gets modified when the cell is under viral infection. To study such changes, several videos were taken through a set of live cell imaging experiments on cell cultures expressing fluorescent mithocondria of both: healthy (mock) and infected cells with Dengue Virus (DENV). The fluorescent organelles cluster in regions that shows up to be brighter where the MD is higher, then MD would be extracted from each frame as proportional to the brightness of the picture. Each experiment has follow standard protocols that provide approximately the same initial state for each cell of the same kind (mock or infected). As any studied cell starts from a different pattern of MD around the nuclei, it is expected for each one of those patterns to be equally likely, then the MD density can be approximated as the average of MD in each frame. Each MD has been modeled through a numerical function build as a two dimensional interpolation of the intensity levels, by using a bivariate b-splines method. Each cell has been modeled as an ellipsis, so the MD density function ρ is a function of the distance to the nuclei center r, the angle from major semi axis θ and time t. By carefully looking at ρ(r, θ, t) at fixed θ or fixed r (figure 1), it is clear that the distribution for infected cells has less defined clusters as shown by having more oscillations and lesser distance between peaks and background. Which means a more disorganized structure. This fact can be used to define a classifier for healthy or infected cells [3]. In this work, a proposal of a quantitative tool to measure the order or disorder on the MD is presented.
publishDate 2016
dc.date.issued.none.fl_str_mv 2016
dc.date.accessioned.none.fl_str_mv 2024-03-11T14:56:35Z
dc.date.available.none.fl_str_mv 2024-03-11T14:56:35Z
dc.type.spa.fl_str_mv Artículo de investigación
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dc.identifier.citation.spa.fl_str_mv Cardona JC, Gallego-Gomez JC. Quantitative study of the differences in mithocondrium distribution between DENV infected and mock cells. AIP Conf Proc [Internet]. 2016;1747(1):90005. Disponible en: https://doi.org/10.1063/1.4954138
dc.identifier.issn.none.fl_str_mv 0094-243X
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/10495/38531
dc.identifier.doi.none.fl_str_mv 10.1063/1.4954138
dc.identifier.eissn.none.fl_str_mv 1551-7616
identifier_str_mv Cardona JC, Gallego-Gomez JC. Quantitative study of the differences in mithocondrium distribution between DENV infected and mock cells. AIP Conf Proc [Internet]. 2016;1747(1):90005. Disponible en: https://doi.org/10.1063/1.4954138
0094-243X
10.1063/1.4954138
1551-7616
url https://hdl.handle.net/10495/38531
dc.language.iso.spa.fl_str_mv eng
language eng
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dc.relation.citationvolume.spa.fl_str_mv 1747
dc.relation.ispartofjournal.spa.fl_str_mv Aip Conference Proceedings
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spelling Gallego Gómez, Juan CarlosCardona Gómez, Juan CarlosGrupo Medicina Molecular y de Translación2024-03-11T14:56:35Z2024-03-11T14:56:35Z2016Cardona JC, Gallego-Gomez JC. Quantitative study of the differences in mithocondrium distribution between DENV infected and mock cells. AIP Conf Proc [Internet]. 2016;1747(1):90005. Disponible en: https://doi.org/10.1063/1.49541380094-243Xhttps://hdl.handle.net/10495/3853110.1063/1.49541381551-7616ABSTRACT: The mithocondria distribution (MD) around nuclei is dynamically changing through clustering, fusion and fission of organelles [1], so the MD takes an appropiated form for each of the different cell functions [2]. Then it is expected that such distribution gets modified when the cell is under viral infection. To study such changes, several videos were taken through a set of live cell imaging experiments on cell cultures expressing fluorescent mithocondria of both: healthy (mock) and infected cells with Dengue Virus (DENV). The fluorescent organelles cluster in regions that shows up to be brighter where the MD is higher, then MD would be extracted from each frame as proportional to the brightness of the picture. Each experiment has follow standard protocols that provide approximately the same initial state for each cell of the same kind (mock or infected). As any studied cell starts from a different pattern of MD around the nuclei, it is expected for each one of those patterns to be equally likely, then the MD density can be approximated as the average of MD in each frame. Each MD has been modeled through a numerical function build as a two dimensional interpolation of the intensity levels, by using a bivariate b-splines method. Each cell has been modeled as an ellipsis, so the MD density function ρ is a function of the distance to the nuclei center r, the angle from major semi axis θ and time t. By carefully looking at ρ(r, θ, t) at fixed θ or fixed r (figure 1), it is clear that the distribution for infected cells has less defined clusters as shown by having more oscillations and lesser distance between peaks and background. Which means a more disorganized structure. This fact can be used to define a classifier for healthy or infected cells [3]. In this work, a proposal of a quantitative tool to measure the order or disorder on the MD is presented.Colombia. Ministerio de Ciencia, Tecnología e InnovaciónCOL01401395 páginasapplication/pdfengAmerican Institute of PhysicsNueva York, Estados Unidoshttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Quantitative Study of the differences in Mithocondrium distribution between DENV Infected and Mock CellsArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionMitocondriasMitochondriaVirus del dengueDengue virusesCultivo de célulasCell culturehttps://id.nlm.nih.gov/mesh/D008928AIP Conf. 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