Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves
ABSTRACT: We have previously reported the use of a combination of computational simulations and targeted experiments to build a first generation mathematical model of peppermint (Mentha × piperita) essential oil biosynthesis. Here, we report on the expansion of this approach to identify the key fact...
- Autores:
-
Ríos Estepa, Rigoberto
Lange, Iris
Lee, James M.
Lange, B. Markus
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2010
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/38433
- Acceso en línea:
- https://hdl.handle.net/10495/38433
- Palabra clave:
- Genes de Plantas
Genes, Plant
Genotipo
Genotype
Mentha piperita
Modelos Teóricos
Models, Theoretical
Hojas de la Planta
Plant Leaves
Plantas Modificadas Genéticamente
Plants, Genetically Modified
Aceites esenciales
Essential oils
http://aims.fao.org/aos/agrovoc/c_2669
https://id.nlm.nih.gov/mesh/D017343
https://id.nlm.nih.gov/mesh/D005838
https://id.nlm.nih.gov/mesh/D036142
https://id.nlm.nih.gov/mesh/D008962
https://id.nlm.nih.gov/mesh/D018515
https://id.nlm.nih.gov/mesh/D030821
- Rights
- openAccess
- License
- http://creativecommons.org/licenses/by-nc-nd/2.5/co/
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Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| title |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| spellingShingle |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves Genes de Plantas Genes, Plant Genotipo Genotype Mentha piperita Modelos Teóricos Models, Theoretical Hojas de la Planta Plant Leaves Plantas Modificadas Genéticamente Plants, Genetically Modified Aceites esenciales Essential oils http://aims.fao.org/aos/agrovoc/c_2669 https://id.nlm.nih.gov/mesh/D017343 https://id.nlm.nih.gov/mesh/D005838 https://id.nlm.nih.gov/mesh/D036142 https://id.nlm.nih.gov/mesh/D008962 https://id.nlm.nih.gov/mesh/D018515 https://id.nlm.nih.gov/mesh/D030821 |
| title_short |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| title_full |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| title_fullStr |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| title_full_unstemmed |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| title_sort |
Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint Leaves |
| dc.creator.fl_str_mv |
Ríos Estepa, Rigoberto Lange, Iris Lee, James M. Lange, B. Markus |
| dc.contributor.author.none.fl_str_mv |
Ríos Estepa, Rigoberto Lange, Iris Lee, James M. Lange, B. Markus |
| dc.contributor.researchgroup.spa.fl_str_mv |
Bioprocesos |
| dc.subject.decs.none.fl_str_mv |
Genes de Plantas Genes, Plant Genotipo Genotype Mentha piperita Modelos Teóricos Models, Theoretical Hojas de la Planta Plant Leaves Plantas Modificadas Genéticamente Plants, Genetically Modified |
| topic |
Genes de Plantas Genes, Plant Genotipo Genotype Mentha piperita Modelos Teóricos Models, Theoretical Hojas de la Planta Plant Leaves Plantas Modificadas Genéticamente Plants, Genetically Modified Aceites esenciales Essential oils http://aims.fao.org/aos/agrovoc/c_2669 https://id.nlm.nih.gov/mesh/D017343 https://id.nlm.nih.gov/mesh/D005838 https://id.nlm.nih.gov/mesh/D036142 https://id.nlm.nih.gov/mesh/D008962 https://id.nlm.nih.gov/mesh/D018515 https://id.nlm.nih.gov/mesh/D030821 |
| dc.subject.agrovoc.none.fl_str_mv |
Aceites esenciales Essential oils |
| dc.subject.agrovocuri.none.fl_str_mv |
http://aims.fao.org/aos/agrovoc/c_2669 |
| dc.subject.meshuri.none.fl_str_mv |
https://id.nlm.nih.gov/mesh/D017343 https://id.nlm.nih.gov/mesh/D005838 https://id.nlm.nih.gov/mesh/D036142 https://id.nlm.nih.gov/mesh/D008962 https://id.nlm.nih.gov/mesh/D018515 https://id.nlm.nih.gov/mesh/D030821 |
| description |
ABSTRACT: We have previously reported the use of a combination of computational simulations and targeted experiments to build a first generation mathematical model of peppermint (Mentha × piperita) essential oil biosynthesis. Here, we report on the expansion of this approach to identify the key factors controlling monoterpenoid essential oil biosynthesis under adverse environmental conditions. We also investigated determinants of essential oil biosynthesis in transgenic peppermint lines with modulated essential oil profiles. A computational perturbation analysis, which was implemented to identify the variables that exert prominent control over the outputs of the model, indicated that the essential oil composition should be highly dependent on certain biosynthetic enzyme concentrations [(+)-pulegone reductase and (+)-menthofuran synthase], whereas oil yield should be particularly sensitive to the density and/or distribution of leaf glandular trichomes, the specialized anatomical structures responsible for the synthesis and storage of essential oils. A microscopic evaluation of leaf surfaces demonstrated that the final mature size of glandular trichomes was the same across all experiments. However, as predicted by the perturbation analysis, differences in the size distribution and the total number of glandular trichomes strongly correlated with differences in monoterpenoid essential oil yield. Building on various experimental data sets, appropriate mathematical functions were selected to approximate the dynamics of glandular trichome distribution/density and enzyme concentrations in our kinetic model. Based on a χ 2 statistical analysis, simulated and measured essential oil profiles were in very good agreement, indicating that modeling is a valuable tool for guiding metabolic engineering efforts aimed at improving essential oil quality and quantity. |
| publishDate |
2010 |
| dc.date.issued.none.fl_str_mv |
2010 |
| dc.date.accessioned.none.fl_str_mv |
2024-03-03T03:46:48Z |
| dc.date.available.none.fl_str_mv |
2024-03-03T03:46:48Z |
| dc.type.spa.fl_str_mv |
Artículo de investigación |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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https://purl.org/redcol/resource_type/ART |
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Ríos-Estepa R, Lange I, Lee JM, Lange BM. Mathematical modeling-guided evaluation of biochemical, developmental, environmental, and genotypic determinants of essential oil composition and yield in peppermint leaves. Plant Physiol. 2010 Apr;152(4):2105-19. doi: 10.1104/pp.109.152256. |
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0032-0889 |
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https://hdl.handle.net/10495/38433 |
| dc.identifier.doi.none.fl_str_mv |
10.1104/pp.109.152256 |
| dc.identifier.eissn.none.fl_str_mv |
1532-2548 |
| identifier_str_mv |
Ríos-Estepa R, Lange I, Lee JM, Lange BM. Mathematical modeling-guided evaluation of biochemical, developmental, environmental, and genotypic determinants of essential oil composition and yield in peppermint leaves. Plant Physiol. 2010 Apr;152(4):2105-19. doi: 10.1104/pp.109.152256. 0032-0889 10.1104/pp.109.152256 1532-2548 |
| url |
https://hdl.handle.net/10495/38433 |
| dc.language.iso.spa.fl_str_mv |
eng |
| language |
eng |
| dc.relation.ispartofjournalabbrev.spa.fl_str_mv |
Plant. Physiol. |
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2119 |
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4 |
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2105 |
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152 |
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Plant Physiology |
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15 páginas |
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Oxford University Press American Society of Plant Biologists |
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Ríos Estepa, RigobertoLange, IrisLee, James M.Lange, B. MarkusBioprocesos2024-03-03T03:46:48Z2024-03-03T03:46:48Z2010Ríos-Estepa R, Lange I, Lee JM, Lange BM. Mathematical modeling-guided evaluation of biochemical, developmental, environmental, and genotypic determinants of essential oil composition and yield in peppermint leaves. Plant Physiol. 2010 Apr;152(4):2105-19. doi: 10.1104/pp.109.152256.0032-0889https://hdl.handle.net/10495/3843310.1104/pp.109.1522561532-2548ABSTRACT: We have previously reported the use of a combination of computational simulations and targeted experiments to build a first generation mathematical model of peppermint (Mentha × piperita) essential oil biosynthesis. Here, we report on the expansion of this approach to identify the key factors controlling monoterpenoid essential oil biosynthesis under adverse environmental conditions. We also investigated determinants of essential oil biosynthesis in transgenic peppermint lines with modulated essential oil profiles. A computational perturbation analysis, which was implemented to identify the variables that exert prominent control over the outputs of the model, indicated that the essential oil composition should be highly dependent on certain biosynthetic enzyme concentrations [(+)-pulegone reductase and (+)-menthofuran synthase], whereas oil yield should be particularly sensitive to the density and/or distribution of leaf glandular trichomes, the specialized anatomical structures responsible for the synthesis and storage of essential oils. A microscopic evaluation of leaf surfaces demonstrated that the final mature size of glandular trichomes was the same across all experiments. However, as predicted by the perturbation analysis, differences in the size distribution and the total number of glandular trichomes strongly correlated with differences in monoterpenoid essential oil yield. Building on various experimental data sets, appropriate mathematical functions were selected to approximate the dynamics of glandular trichome distribution/density and enzyme concentrations in our kinetic model. Based on a χ 2 statistical analysis, simulated and measured essential oil profiles were in very good agreement, indicating that modeling is a valuable tool for guiding metabolic engineering efforts aimed at improving essential oil quality and quantity.COL002371515 páginasapplication/pdfengOxford University PressAmerican Society of Plant BiologistsRockville, Estados Unidoshttp://creativecommons.org/licenses/by-nc-nd/2.5/co/https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Mathematical Modeling-Guided Evaluation of Biochemical, Developmental, Environmental, and Genotypic Determinants of Essential Oil Composition and Yield in Peppermint LeavesArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionGenes de PlantasGenes, PlantGenotipoGenotypeMentha piperitaModelos TeóricosModels, TheoreticalHojas de la PlantaPlant LeavesPlantas Modificadas GenéticamentePlants, Genetically ModifiedAceites esencialesEssential oilshttp://aims.fao.org/aos/agrovoc/c_2669https://id.nlm.nih.gov/mesh/D017343https://id.nlm.nih.gov/mesh/D005838https://id.nlm.nih.gov/mesh/D036142https://id.nlm.nih.gov/mesh/D008962https://id.nlm.nih.gov/mesh/D018515https://id.nlm.nih.gov/mesh/D030821Plant. Physiol.211942105152Plant PhysiologyPublicationORIGINALRiosRigoberto_2010_MathematicalModelingGuide.pdfRiosRigoberto_2010_MathematicalModelingGuide.pdfArtículo de investigaciónapplication/pdf1751158https://bibliotecadigital.udea.edu.co/bitstreams/a8835753-352f-4c46-a791-2174a83bf3fd/download65dd39f0047e9823d9f9487d475da57bMD51trueAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/fc9f75d3-4151-40b5-9508-a8c2d0770add/download8a4605be74aa9ea9d79846c1fba20a33MD52falseAnonymousREADTEXTRiosRigoberto_2010_MathematicalModelingGuide.pdf.txtRiosRigoberto_2010_MathematicalModelingGuide.pdf.txtExtracted texttext/plain71642https://bibliotecadigital.udea.edu.co/bitstreams/ed0238bf-9b06-4be1-a5b0-6df9b3a7357d/download5c0f58933ae55a15ab624264ea0103deMD53falseAnonymousREADTHUMBNAILRiosRigoberto_2010_MathematicalModelingGuide.pdf.jpgRiosRigoberto_2010_MathematicalModelingGuide.pdf.jpgGenerated Thumbnailimage/jpeg17208https://bibliotecadigital.udea.edu.co/bitstreams/9b28ace0-dcb4-41a0-9963-db990a25d2d5/download6790b2a74bb43e2ec47578afab7740e3MD54falseAnonymousREAD10495/38433oai:bibliotecadigital.udea.edu.co:10495/384332025-03-26 22:45:16.197http://creativecommons.org/licenses/by-nc-nd/2.5/co/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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 |
