Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
ABSTRACT: Introduction: It has been shown that the transmission of SARS-CoV-2 occurs mainly by air, and the risk of infection is greater in closed spaces. Objective: To describe the epidemiology, virology and molecular characterization of a COVID-19 outbreak at a closed vaccination point during the...
- Autores:
-
Rugeles Lopez, María Teresa
Navas Navas, María Cristina
Cerón Chavez, Juan David
AguilarJiménez, Wbeimar
Díaz Castrillón, Francisco Javier
- Tipo de recurso:
- Article of investigation
- Fecha de publicación:
- 2023
- Institución:
- Universidad de Antioquia
- Repositorio:
- Repositorio UdeA
- Idioma:
- eng
- OAI Identifier:
- oai:bibliotecadigital.udea.edu.co:10495/35329
- Acceso en línea:
- https://hdl.handle.net/10495/35329
- Palabra clave:
- SARS-CoV-2
Síndrome Respiratorio Agudo Grave
Severe Acute Respiratory Syndrome
Brotes de Enfermedades
Disease Outbreaks
Enfermedades Transmisibles
Communicable Diseases
Vacunación
Vaccination
SARS-CoV-2 - Colombia
- Rights
- openAccess
- License
- https://creativecommons.org/licenses/by/4.0/
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| dc.title.spa.fl_str_mv |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| dc.title.translated.spa.fl_str_mv |
Reporte de un brote de infección por SARS-CoV-2 por transmisión aérea: evidencia epidemiológica y molecular |
| title |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| spellingShingle |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence SARS-CoV-2 Síndrome Respiratorio Agudo Grave Severe Acute Respiratory Syndrome Brotes de Enfermedades Disease Outbreaks Enfermedades Transmisibles Communicable Diseases Vacunación Vaccination SARS-CoV-2 - Colombia |
| title_short |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| title_full |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| title_fullStr |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| title_full_unstemmed |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| title_sort |
Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence |
| dc.creator.fl_str_mv |
Rugeles Lopez, María Teresa Navas Navas, María Cristina Cerón Chavez, Juan David AguilarJiménez, Wbeimar Díaz Castrillón, Francisco Javier |
| dc.contributor.author.none.fl_str_mv |
Rugeles Lopez, María Teresa Navas Navas, María Cristina Cerón Chavez, Juan David AguilarJiménez, Wbeimar Díaz Castrillón, Francisco Javier |
| dc.contributor.researchgroup.spa.fl_str_mv |
Grupo de Gastrohepatología Inmunovirología |
| dc.subject.decs.none.fl_str_mv |
SARS-CoV-2 Síndrome Respiratorio Agudo Grave Severe Acute Respiratory Syndrome Brotes de Enfermedades Disease Outbreaks Enfermedades Transmisibles Communicable Diseases Vacunación Vaccination SARS-CoV-2 - Colombia |
| topic |
SARS-CoV-2 Síndrome Respiratorio Agudo Grave Severe Acute Respiratory Syndrome Brotes de Enfermedades Disease Outbreaks Enfermedades Transmisibles Communicable Diseases Vacunación Vaccination SARS-CoV-2 - Colombia |
| description |
ABSTRACT: Introduction: It has been shown that the transmission of SARS-CoV-2 occurs mainly by air, and the risk of infection is greater in closed spaces. Objective: To describe the epidemiology, virology and molecular characterization of a COVID-19 outbreak at a closed vaccination point during the third wave of SARS-CoV-2 in Colombia. Materials and methods: Diagnostic tests, interviews, sampling, cell cultures and viral sequencing were carried out, the latter being molecular characterization and lineage identification. Results: Seven workers were positive for SARS-CoV-2; among these, 3 samples were analyzed, plus an additional sample belonging to the mother of the presumed index case; all samples were identified with lineage B.1.625, with a maximum of 2 nucleotides difference between them. Conclusions: Variant B.1.625 was identified as the cause of the COVID-19 outbreak, and a co-worker was also identified as the index case. Unexpectedly, attending a vaccination day became a risk factor for acquiring the infection. |
| publishDate |
2023 |
| dc.date.accessioned.none.fl_str_mv |
2023-06-07T15:08:46Z |
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2023-06-07T15:08:46Z |
| dc.date.issued.none.fl_str_mv |
2023 |
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Artículo de investigación |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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http://purl.org/coar/version/c_970fb48d4fbd8a85 |
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info:eu-repo/semantics/article |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
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Navas MC, Cerón JD, Aguilar-Jiménez W, Rugeles MT, Díaz FJ. Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence. Biomédica. 2023;43:121-30. https://doi.org/10.7705/biomedica.6695 |
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0120-4157 |
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https://hdl.handle.net/10495/35329 |
| dc.identifier.doi.none.fl_str_mv |
10.7705/biomedica.6695 |
| dc.identifier.eissn.none.fl_str_mv |
2590-7379 |
| identifier_str_mv |
Navas MC, Cerón JD, Aguilar-Jiménez W, Rugeles MT, Díaz FJ. Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence. Biomédica. 2023;43:121-30. https://doi.org/10.7705/biomedica.6695 0120-4157 10.7705/biomedica.6695 2590-7379 |
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https://hdl.handle.net/10495/35329 |
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eng |
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eng |
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Biomédica |
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130 |
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1 |
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121 |
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43 |
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Biomédica |
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https://creativecommons.org/licenses/by/4.0/ |
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Instituto Nacional de Salud |
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Bogotá, Colombia |
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Universidad de Antioquia |
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Rugeles Lopez, María TeresaNavas Navas, María CristinaCerón Chavez, Juan DavidAguilarJiménez, WbeimarDíaz Castrillón, Francisco JavierGrupo de GastrohepatologíaInmunovirología2023-06-07T15:08:46Z2023-06-07T15:08:46Z2023Navas MC, Cerón JD, Aguilar-Jiménez W, Rugeles MT, Díaz FJ. Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence. Biomédica. 2023;43:121-30. https://doi.org/10.7705/biomedica.66950120-4157https://hdl.handle.net/10495/3532910.7705/biomedica.66952590-7379ABSTRACT: Introduction: It has been shown that the transmission of SARS-CoV-2 occurs mainly by air, and the risk of infection is greater in closed spaces. Objective: To describe the epidemiology, virology and molecular characterization of a COVID-19 outbreak at a closed vaccination point during the third wave of SARS-CoV-2 in Colombia. Materials and methods: Diagnostic tests, interviews, sampling, cell cultures and viral sequencing were carried out, the latter being molecular characterization and lineage identification. Results: Seven workers were positive for SARS-CoV-2; among these, 3 samples were analyzed, plus an additional sample belonging to the mother of the presumed index case; all samples were identified with lineage B.1.625, with a maximum of 2 nucleotides difference between them. Conclusions: Variant B.1.625 was identified as the cause of the COVID-19 outbreak, and a co-worker was also identified as the index case. Unexpectedly, attending a vaccination day became a risk factor for acquiring the infection.RESUMEN: Introducción. Se ha demostrado que la transmisión de SARS-CoV-2 se produce principalmente por vía aérea y el riesgo de infección es mayor en espacios cerrados con alta concentración de personas; este último factor se presentó en algunos de los puestos de vacunación de la ciudad de Medellín. Objetivo. Describir la epidemiología, virología y caracterización molecular de un brote de COVID-19 en un punto de vacunación cerrado durante la tercera ola de SARS-CoV-2 en Colombia. Materiales y métodos. Se realizaron test diagnósticos, entrevistas, toma de muestras, aislamiento viral y secuenciación genómica. Con esta última, se hizo la caracterización molecular y se identificó el linaje. Resultados. Siete trabajadores fueron positivos para SARS-CoV-2, y de estos, tres muestras fueron secuenciadas, más una muestra adicional perteneciente a la madre del presunto caso índice. Todas las muestras fueron identificadas con el linaje B.1.625, con un máximo de dos nucleótidos de diferencia entre ellas. Conclusiones. Se identificó la variante B.1.625 como la causante del brote de COVID-19, y también un compañero de trabajo fue identificado como el caso índice. De forma imprevista, asistir a una jornada de vacunación se convirtió en un factor de riesgo para adquirir la infección.Universidad de Antioquia. Vicerrectoría de investigación. Comité para el Desarrollo de la Investigación - CODICOL0024159COL001244410application/pdfengInstituto Nacional de SaludBogotá, Colombiahttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidenceReporte de un brote de infección por SARS-CoV-2 por transmisión aérea: evidencia epidemiológica y molecularArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionSARS-CoV-2Síndrome Respiratorio Agudo GraveSevere Acute Respiratory SyndromeBrotes de EnfermedadesDisease OutbreaksEnfermedades TransmisiblesCommunicable DiseasesVacunaciónVaccinationSARS-CoV-2 - ColombiaBiomédica130112143BiomédicaSostenibilidad2020-34194RoR:03bp5hc83PublicationCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8927https://bibliotecadigital.udea.edu.co/bitstreams/6b2c5492-d5f0-4d60-99dd-546ec98b221b/download1646d1f6b96dbbbc38035efc9239ac9cMD52falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/8958d4cf-cb64-4ef2-b1f5-7d8cecc2b749/download8a4605be74aa9ea9d79846c1fba20a33MD53falseAnonymousREADORIGINALRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdfRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdfArtículo de investigaciónapplication/pdf1701324https://bibliotecadigital.udea.edu.co/bitstreams/4a1bd183-a96a-4a9a-8405-8a5ea2908f15/download588d848491622a5a1e610e6ed26041c3MD51trueAnonymousREADTEXTRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.txtRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.txtExtracted texttext/plain36138https://bibliotecadigital.udea.edu.co/bitstreams/19b624ec-4f5e-4cfb-8d86-1b49230e770a/download0633662c3ef4058b59a6e6ad821ad275MD54falseAnonymousREADTHUMBNAILRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.jpgRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.jpgGenerated Thumbnailimage/jpeg16133https://bibliotecadigital.udea.edu.co/bitstreams/1fea733b-4304-4aea-80f6-864fb6343210/download70032877056497d92b2c905436186e65MD55falseAnonymousREAD10495/35329oai:bibliotecadigital.udea.edu.co:10495/353292025-03-26 20:38:14.658https://creativecommons.org/licenses/by/4.0/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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 |
