Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence

ABSTRACT: Introduction: It has been shown that the transmission of SARS-CoV-2 occurs mainly by air, and the risk of infection is greater in closed spaces. Objective: To describe the epidemiology, virology and molecular characterization of a COVID-19 outbreak at a closed vaccination point during the...

Full description

Autores:
Rugeles Lopez, María Teresa
Navas Navas, María Cristina
Cerón Chavez, Juan David
AguilarJiménez, Wbeimar
Díaz Castrillón, Francisco Javier
Tipo de recurso:
Article of investigation
Fecha de publicación:
2023
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/35329
Acceso en línea:
https://hdl.handle.net/10495/35329
Palabra clave:
SARS-CoV-2
Síndrome Respiratorio Agudo Grave
Severe Acute Respiratory Syndrome
Brotes de Enfermedades
Disease Outbreaks
Enfermedades Transmisibles
Communicable Diseases
Vacunación
Vaccination
SARS-CoV-2 - Colombia
Rights
openAccess
License
https://creativecommons.org/licenses/by/4.0/
id UDEA2_2848edeaa9dafe828063ab4d61c6e5c7
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/35329
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
dc.title.translated.spa.fl_str_mv Reporte de un brote de infección por SARS-CoV-2 por transmisión aérea: evidencia epidemiológica y molecular
title Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
spellingShingle Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
SARS-CoV-2
Síndrome Respiratorio Agudo Grave
Severe Acute Respiratory Syndrome
Brotes de Enfermedades
Disease Outbreaks
Enfermedades Transmisibles
Communicable Diseases
Vacunación
Vaccination
SARS-CoV-2 - Colombia
title_short Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
title_full Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
title_fullStr Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
title_full_unstemmed Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
title_sort Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence
dc.creator.fl_str_mv Rugeles Lopez, María Teresa
Navas Navas, María Cristina
Cerón Chavez, Juan David
AguilarJiménez, Wbeimar
Díaz Castrillón, Francisco Javier
dc.contributor.author.none.fl_str_mv Rugeles Lopez, María Teresa
Navas Navas, María Cristina
Cerón Chavez, Juan David
AguilarJiménez, Wbeimar
Díaz Castrillón, Francisco Javier
dc.contributor.researchgroup.spa.fl_str_mv Grupo de Gastrohepatología
Inmunovirología
dc.subject.decs.none.fl_str_mv SARS-CoV-2
Síndrome Respiratorio Agudo Grave
Severe Acute Respiratory Syndrome
Brotes de Enfermedades
Disease Outbreaks
Enfermedades Transmisibles
Communicable Diseases
Vacunación
Vaccination
SARS-CoV-2 - Colombia
topic SARS-CoV-2
Síndrome Respiratorio Agudo Grave
Severe Acute Respiratory Syndrome
Brotes de Enfermedades
Disease Outbreaks
Enfermedades Transmisibles
Communicable Diseases
Vacunación
Vaccination
SARS-CoV-2 - Colombia
description ABSTRACT: Introduction: It has been shown that the transmission of SARS-CoV-2 occurs mainly by air, and the risk of infection is greater in closed spaces. Objective: To describe the epidemiology, virology and molecular characterization of a COVID-19 outbreak at a closed vaccination point during the third wave of SARS-CoV-2 in Colombia. Materials and methods: Diagnostic tests, interviews, sampling, cell cultures and viral sequencing were carried out, the latter being molecular characterization and lineage identification. Results: Seven workers were positive for SARS-CoV-2; among these, 3 samples were analyzed, plus an additional sample belonging to the mother of the presumed index case; all samples were identified with lineage B.1.625, with a maximum of 2 nucleotides difference between them. Conclusions: Variant B.1.625 was identified as the cause of the COVID-19 outbreak, and a co-worker was also identified as the index case. Unexpectedly, attending a vaccination day became a risk factor for acquiring the infection.
publishDate 2023
dc.date.accessioned.none.fl_str_mv 2023-06-07T15:08:46Z
dc.date.available.none.fl_str_mv 2023-06-07T15:08:46Z
dc.date.issued.none.fl_str_mv 2023
dc.type.spa.fl_str_mv Artículo de investigación
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.redcol.spa.fl_str_mv https://purl.org/redcol/resource_type/ART
dc.type.coarversion.spa.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/publishedVersion
format http://purl.org/coar/resource_type/c_2df8fbb1
status_str publishedVersion
dc.identifier.citation.spa.fl_str_mv Navas MC, Cerón JD, Aguilar-Jiménez W, Rugeles MT, Díaz FJ. Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence. Biomédica. 2023;43:121-30. https://doi.org/10.7705/biomedica.6695
dc.identifier.issn.none.fl_str_mv 0120-4157
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/10495/35329
dc.identifier.doi.none.fl_str_mv 10.7705/biomedica.6695
dc.identifier.eissn.none.fl_str_mv 2590-7379
identifier_str_mv Navas MC, Cerón JD, Aguilar-Jiménez W, Rugeles MT, Díaz FJ. Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence. Biomédica. 2023;43:121-30. https://doi.org/10.7705/biomedica.6695
0120-4157
10.7705/biomedica.6695
2590-7379
url https://hdl.handle.net/10495/35329
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv Biomédica
dc.relation.citationendpage.spa.fl_str_mv 130
dc.relation.citationissue.spa.fl_str_mv 1
dc.relation.citationstartpage.spa.fl_str_mv 121
dc.relation.citationvolume.spa.fl_str_mv 43
dc.relation.ispartofjournal.spa.fl_str_mv Biomédica
dc.rights.uri.spa.fl_str_mv https://creativecommons.org/licenses/by/4.0/
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by/2.5/co/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0/
http://creativecommons.org/licenses/by/2.5/co/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.spa.fl_str_mv 10
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Instituto Nacional de Salud
dc.publisher.place.spa.fl_str_mv Bogotá, Colombia
institution Universidad de Antioquia
bitstream.url.fl_str_mv https://bibliotecadigital.udea.edu.co/bitstreams/6b2c5492-d5f0-4d60-99dd-546ec98b221b/download
https://bibliotecadigital.udea.edu.co/bitstreams/8958d4cf-cb64-4ef2-b1f5-7d8cecc2b749/download
https://bibliotecadigital.udea.edu.co/bitstreams/4a1bd183-a96a-4a9a-8405-8a5ea2908f15/download
https://bibliotecadigital.udea.edu.co/bitstreams/19b624ec-4f5e-4cfb-8d86-1b49230e770a/download
https://bibliotecadigital.udea.edu.co/bitstreams/1fea733b-4304-4aea-80f6-864fb6343210/download
bitstream.checksum.fl_str_mv 1646d1f6b96dbbbc38035efc9239ac9c
8a4605be74aa9ea9d79846c1fba20a33
588d848491622a5a1e610e6ed26041c3
0633662c3ef4058b59a6e6ad821ad275
70032877056497d92b2c905436186e65
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional de la Universidad de Antioquia
repository.mail.fl_str_mv aplicacionbibliotecadigitalbiblioteca@udea.edu.co
_version_ 1851052326150733824
spelling Rugeles Lopez, María TeresaNavas Navas, María CristinaCerón Chavez, Juan DavidAguilarJiménez, WbeimarDíaz Castrillón, Francisco JavierGrupo de GastrohepatologíaInmunovirología2023-06-07T15:08:46Z2023-06-07T15:08:46Z2023Navas MC, Cerón JD, Aguilar-Jiménez W, Rugeles MT, Díaz FJ. Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidence. Biomédica. 2023;43:121-30. https://doi.org/10.7705/biomedica.66950120-4157https://hdl.handle.net/10495/3532910.7705/biomedica.66952590-7379ABSTRACT: Introduction: It has been shown that the transmission of SARS-CoV-2 occurs mainly by air, and the risk of infection is greater in closed spaces. Objective: To describe the epidemiology, virology and molecular characterization of a COVID-19 outbreak at a closed vaccination point during the third wave of SARS-CoV-2 in Colombia. Materials and methods: Diagnostic tests, interviews, sampling, cell cultures and viral sequencing were carried out, the latter being molecular characterization and lineage identification. Results: Seven workers were positive for SARS-CoV-2; among these, 3 samples were analyzed, plus an additional sample belonging to the mother of the presumed index case; all samples were identified with lineage B.1.625, with a maximum of 2 nucleotides difference between them. Conclusions: Variant B.1.625 was identified as the cause of the COVID-19 outbreak, and a co-worker was also identified as the index case. Unexpectedly, attending a vaccination day became a risk factor for acquiring the infection.RESUMEN: Introducción. Se ha demostrado que la transmisión de SARS-CoV-2 se produce principalmente por vía aérea y el riesgo de infección es mayor en espacios cerrados con alta concentración de personas; este último factor se presentó en algunos de los puestos de vacunación de la ciudad de Medellín. Objetivo. Describir la epidemiología, virología y caracterización molecular de un brote de COVID-19 en un punto de vacunación cerrado durante la tercera ola de SARS-CoV-2 en Colombia. Materiales y métodos. Se realizaron test diagnósticos, entrevistas, toma de muestras, aislamiento viral y secuenciación genómica. Con esta última, se hizo la caracterización molecular y se identificó el linaje. Resultados. Siete trabajadores fueron positivos para SARS-CoV-2, y de estos, tres muestras fueron secuenciadas, más una muestra adicional perteneciente a la madre del presunto caso índice. Todas las muestras fueron identificadas con el linaje B.1.625, con un máximo de dos nucleótidos de diferencia entre ellas. Conclusiones. Se identificó la variante B.1.625 como la causante del brote de COVID-19, y también un compañero de trabajo fue identificado como el caso índice. De forma imprevista, asistir a una jornada de vacunación se convirtió en un factor de riesgo para adquirir la infección.Universidad de Antioquia. Vicerrectoría de investigación. Comité para el Desarrollo de la Investigación - CODICOL0024159COL001244410application/pdfengInstituto Nacional de SaludBogotá, Colombiahttps://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/2.5/co/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Outbreak report of SARS-CoV-2 infection by airborne transmission: Epidemiologic and molecular evidenceReporte de un brote de infección por SARS-CoV-2 por transmisión aérea: evidencia epidemiológica y molecularArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionSARS-CoV-2Síndrome Respiratorio Agudo GraveSevere Acute Respiratory SyndromeBrotes de EnfermedadesDisease OutbreaksEnfermedades TransmisiblesCommunicable DiseasesVacunaciónVaccinationSARS-CoV-2 - ColombiaBiomédica130112143BiomédicaSostenibilidad2020-34194RoR:03bp5hc83PublicationCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8927https://bibliotecadigital.udea.edu.co/bitstreams/6b2c5492-d5f0-4d60-99dd-546ec98b221b/download1646d1f6b96dbbbc38035efc9239ac9cMD52falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/8958d4cf-cb64-4ef2-b1f5-7d8cecc2b749/download8a4605be74aa9ea9d79846c1fba20a33MD53falseAnonymousREADORIGINALRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdfRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdfArtículo de investigaciónapplication/pdf1701324https://bibliotecadigital.udea.edu.co/bitstreams/4a1bd183-a96a-4a9a-8405-8a5ea2908f15/download588d848491622a5a1e610e6ed26041c3MD51trueAnonymousREADTEXTRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.txtRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.txtExtracted texttext/plain36138https://bibliotecadigital.udea.edu.co/bitstreams/19b624ec-4f5e-4cfb-8d86-1b49230e770a/download0633662c3ef4058b59a6e6ad821ad275MD54falseAnonymousREADTHUMBNAILRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.jpgRugelesMaria_2023_OutbreakReportSARS-CoV-2.pdf.jpgGenerated Thumbnailimage/jpeg16133https://bibliotecadigital.udea.edu.co/bitstreams/1fea733b-4304-4aea-80f6-864fb6343210/download70032877056497d92b2c905436186e65MD55falseAnonymousREAD10495/35329oai:bibliotecadigital.udea.edu.co:10495/353292025-03-26 20:38:14.658https://creativecommons.org/licenses/by/4.0/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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