Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family

ABSTRACT: The heterogeneity of the clinical outcome of Mycobacterium tuberculosis (Mtb) infection may be due in part to different strategies used by circulating strains to cause disease. This heterogeneity is one of the main limitations to eradicate tuberculosis disease. In this study, we have compa...

Full description

Autores:
Baena García, Andrés
Cabarcas Jaramillo, Felipe
Alzate Restrepo, Juan Fernando
Álvarez Eraso, Karen Luisa Fernanda
Isaza Agudelo, Juan Pablo
Barrera Robledo, Luis Fernando
Tipo de recurso:
Article of investigation
Fecha de publicación:
2019
Institución:
Universidad de Antioquia
Repositorio:
Repositorio UdeA
Idioma:
eng
OAI Identifier:
oai:bibliotecadigital.udea.edu.co:10495/43136
Acceso en línea:
https://hdl.handle.net/10495/43136
Palabra clave:
Colombia
Mycobacterium tuberculosis
RNA-Seq
Fenotipo
Phenotype
Virulencia
Virulence
Transcriptoma
Transcriptome
Tuberculosis - microbiología
Tuberculosis - microbiology
https://id.nlm.nih.gov/mesh/D003105
https://id.nlm.nih.gov/mesh/D009169
https://id.nlm.nih.gov/mesh/D000081246
https://id.nlm.nih.gov/mesh/D010641
https://id.nlm.nih.gov/mesh/D014774
https://id.nlm.nih.gov/mesh/D059467
https://id.nlm.nih.gov/mesh/D014376
Rights
openAccess
License
http://creativecommons.org/licenses/by-nc-nd/2.5/co/
id UDEA2_172397550d2c33bb0cb5dfcf7b260ac5
oai_identifier_str oai:bibliotecadigital.udea.edu.co:10495/43136
network_acronym_str UDEA2
network_name_str Repositorio UdeA
repository_id_str
dc.title.spa.fl_str_mv Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
title Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
spellingShingle Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
Colombia
Mycobacterium tuberculosis
RNA-Seq
Fenotipo
Phenotype
Virulencia
Virulence
Transcriptoma
Transcriptome
Tuberculosis - microbiología
Tuberculosis - microbiology
https://id.nlm.nih.gov/mesh/D003105
https://id.nlm.nih.gov/mesh/D009169
https://id.nlm.nih.gov/mesh/D000081246
https://id.nlm.nih.gov/mesh/D010641
https://id.nlm.nih.gov/mesh/D014774
https://id.nlm.nih.gov/mesh/D059467
https://id.nlm.nih.gov/mesh/D014376
title_short Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
title_full Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
title_fullStr Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
title_full_unstemmed Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
title_sort Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
dc.creator.fl_str_mv Baena García, Andrés
Cabarcas Jaramillo, Felipe
Alzate Restrepo, Juan Fernando
Álvarez Eraso, Karen Luisa Fernanda
Isaza Agudelo, Juan Pablo
Barrera Robledo, Luis Fernando
dc.contributor.author.none.fl_str_mv Baena García, Andrés
Cabarcas Jaramillo, Felipe
Alzate Restrepo, Juan Fernando
Álvarez Eraso, Karen Luisa Fernanda
Isaza Agudelo, Juan Pablo
Barrera Robledo, Luis Fernando
dc.contributor.researchgroup.spa.fl_str_mv Grupo de Inmunología Celular e Inmunogenética
Grupo de Parasitología, Universidad de Antioquia
Sistemas Embebidos e Inteligencia Computacional (SISTEMIC)
dc.subject.decs.none.fl_str_mv Colombia
Mycobacterium tuberculosis
RNA-Seq
Fenotipo
Phenotype
Virulencia
Virulence
Transcriptoma
Transcriptome
Tuberculosis - microbiología
Tuberculosis - microbiology
topic Colombia
Mycobacterium tuberculosis
RNA-Seq
Fenotipo
Phenotype
Virulencia
Virulence
Transcriptoma
Transcriptome
Tuberculosis - microbiología
Tuberculosis - microbiology
https://id.nlm.nih.gov/mesh/D003105
https://id.nlm.nih.gov/mesh/D009169
https://id.nlm.nih.gov/mesh/D000081246
https://id.nlm.nih.gov/mesh/D010641
https://id.nlm.nih.gov/mesh/D014774
https://id.nlm.nih.gov/mesh/D059467
https://id.nlm.nih.gov/mesh/D014376
dc.subject.meshuri.none.fl_str_mv https://id.nlm.nih.gov/mesh/D003105
https://id.nlm.nih.gov/mesh/D009169
https://id.nlm.nih.gov/mesh/D000081246
https://id.nlm.nih.gov/mesh/D010641
https://id.nlm.nih.gov/mesh/D014774
https://id.nlm.nih.gov/mesh/D059467
https://id.nlm.nih.gov/mesh/D014376
description ABSTRACT: The heterogeneity of the clinical outcome of Mycobacterium tuberculosis (Mtb) infection may be due in part to different strategies used by circulating strains to cause disease. This heterogeneity is one of the main limitations to eradicate tuberculosis disease. In this study, we have compared the transcriptional response of two closely related Colombian clinical isolates (UT127 and UT205) of the LAM family under two axenic media conditions. These clinical isolates are phenotypically different at the level of cell death, cytokine production, growth kinetics upon in vitro infection of human tissue macrophages, and membrane vesicle secretion upon culture in synthetic medium. Using RNA-seq, we have identified different pathways that account for two different strategies to cope with the stressful condition of a carbon-poor media such as Sauton's. We showed that the clinical isolate UT205 focus mainly in the activation of virulence systems such as the ESX-1, synthesis of diacyl-trehalose, polyacyl-trehalose, and sulfolipids, while UT127 concentrates its efforts mainly in the survival mode by the activation of the DNA replication, cell division, and lipid biosynthesis. This is an example of two Mtb isolates that belong to the same family and lineage, and even though they have a very similar genome, its transcriptional regulation showed important differences. This results in summary highlight the necessity to reach a better understanding of the heterogeneity in the behavior of these circulating Mtb strains which may help us to design better treatments and vaccines and to identify new targets for drugs.
publishDate 2019
dc.date.issued.none.fl_str_mv 2019
dc.date.accessioned.none.fl_str_mv 2024-11-04T15:25:32Z
dc.date.available.none.fl_str_mv 2024-11-04T15:25:32Z
dc.type.spa.fl_str_mv Artículo de investigación
dc.type.coar.spa.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.redcol.spa.fl_str_mv https://purl.org/redcol/resource_type/ART
dc.type.coarversion.spa.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driver.spa.fl_str_mv info:eu-repo/semantics/article
dc.type.version.spa.fl_str_mv info:eu-repo/semantics/publishedVersion
format http://purl.org/coar/resource_type/c_2df8fbb1
status_str publishedVersion
dc.identifier.citation.spa.fl_str_mv Baena A, Cabarcas F, Alvarez-Eraso KLF, Isaza JP, Alzate JF, Barrera LF. Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family. Virulence. 2019 Dec;10(1):695-710. doi: 10.1080/21505594.2019.1642045.
dc.identifier.issn.none.fl_str_mv 2150-5594
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/10495/43136
dc.identifier.doi.none.fl_str_mv 10.1080/21505594.2019.1642045.
dc.identifier.eissn.none.fl_str_mv 2150-5608
identifier_str_mv Baena A, Cabarcas F, Alvarez-Eraso KLF, Isaza JP, Alzate JF, Barrera LF. Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family. Virulence. 2019 Dec;10(1):695-710. doi: 10.1080/21505594.2019.1642045.
2150-5594
10.1080/21505594.2019.1642045.
2150-5608
url https://hdl.handle.net/10495/43136
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartofjournalabbrev.spa.fl_str_mv Virulence
dc.relation.citationendpage.spa.fl_str_mv 710
dc.relation.citationissue.spa.fl_str_mv 1
dc.relation.citationstartpage.spa.fl_str_mv 695
dc.relation.citationvolume.spa.fl_str_mv 10
dc.relation.ispartofjournal.spa.fl_str_mv Virulence
dc.rights.uri.*.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/2.5/co/
dc.rights.uri.spa.fl_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
dc.rights.accessrights.spa.fl_str_mv info:eu-repo/semantics/openAccess
dc.rights.coar.spa.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/2.5/co/
https://creativecommons.org/licenses/by-nc-nd/4.0/
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.extent.spa.fl_str_mv 16 páginas
dc.format.mimetype.spa.fl_str_mv application/pdf
dc.publisher.spa.fl_str_mv Taylor & Francis Open Access
dc.publisher.place.spa.fl_str_mv Austin, Estados Unidos
institution Universidad de Antioquia
bitstream.url.fl_str_mv https://bibliotecadigital.udea.edu.co/bitstreams/a8e7ef5c-2843-4e58-9940-e5a959e7ac59/download
https://bibliotecadigital.udea.edu.co/bitstreams/3fb4a5b7-0db1-4362-8cc3-9ad9266d1d56/download
https://bibliotecadigital.udea.edu.co/bitstreams/d146e2ac-233e-4ac3-b47d-ec85595fd050/download
https://bibliotecadigital.udea.edu.co/bitstreams/1a836dd3-cff5-4f3d-b355-62f22bbab33f/download
bitstream.checksum.fl_str_mv c8263603d040e5b4d1da44c1380b0af1
8a4605be74aa9ea9d79846c1fba20a33
c05cea781430f3f6a03068cf0fe9b920
7d09e1f4c50a3cd49da9c69467579d25
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositorio Institucional de la Universidad de Antioquia
repository.mail.fl_str_mv aplicacionbibliotecadigitalbiblioteca@udea.edu.co
_version_ 1851052491878170624
spelling Baena García, AndrésCabarcas Jaramillo, FelipeAlzate Restrepo, Juan FernandoÁlvarez Eraso, Karen Luisa FernandaIsaza Agudelo, Juan PabloBarrera Robledo, Luis FernandoGrupo de Inmunología Celular e InmunogenéticaGrupo de Parasitología, Universidad de AntioquiaSistemas Embebidos e Inteligencia Computacional (SISTEMIC)2024-11-04T15:25:32Z2024-11-04T15:25:32Z2019Baena A, Cabarcas F, Alvarez-Eraso KLF, Isaza JP, Alzate JF, Barrera LF. Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family. Virulence. 2019 Dec;10(1):695-710. doi: 10.1080/21505594.2019.1642045.2150-5594https://hdl.handle.net/10495/4313610.1080/21505594.2019.1642045.2150-5608ABSTRACT: The heterogeneity of the clinical outcome of Mycobacterium tuberculosis (Mtb) infection may be due in part to different strategies used by circulating strains to cause disease. This heterogeneity is one of the main limitations to eradicate tuberculosis disease. In this study, we have compared the transcriptional response of two closely related Colombian clinical isolates (UT127 and UT205) of the LAM family under two axenic media conditions. These clinical isolates are phenotypically different at the level of cell death, cytokine production, growth kinetics upon in vitro infection of human tissue macrophages, and membrane vesicle secretion upon culture in synthetic medium. Using RNA-seq, we have identified different pathways that account for two different strategies to cope with the stressful condition of a carbon-poor media such as Sauton's. We showed that the clinical isolate UT205 focus mainly in the activation of virulence systems such as the ESX-1, synthesis of diacyl-trehalose, polyacyl-trehalose, and sulfolipids, while UT127 concentrates its efforts mainly in the survival mode by the activation of the DNA replication, cell division, and lipid biosynthesis. This is an example of two Mtb isolates that belong to the same family and lineage, and even though they have a very similar genome, its transcriptional regulation showed important differences. This results in summary highlight the necessity to reach a better understanding of the heterogeneity in the behavior of these circulating Mtb strains which may help us to design better treatments and vaccines and to identify new targets for drugs.Universidad de Antioquia. Vicerrectoría de investigación. Comité para el Desarrollo de la Investigación - CODIColombia. Ministerio de Ciencia, Tecnología e Innovación - MinCienciasCOL0008639COL0007506COL001071716 páginasapplication/pdfengTaylor & Francis Open AccessAustin, Estados Unidoshttp://creativecommons.org/licenses/by-nc-nd/2.5/co/https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 familyArtículo de investigaciónhttp://purl.org/coar/resource_type/c_2df8fbb1https://purl.org/redcol/resource_type/ARThttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionColombiaMycobacterium tuberculosisRNA-SeqFenotipoPhenotypeVirulenciaVirulenceTranscriptomaTranscriptomeTuberculosis - microbiologíaTuberculosis - microbiologyhttps://id.nlm.nih.gov/mesh/D003105https://id.nlm.nih.gov/mesh/D009169https://id.nlm.nih.gov/mesh/D000081246https://id.nlm.nih.gov/mesh/D010641https://id.nlm.nih.gov/mesh/D014774https://id.nlm.nih.gov/mesh/D059467https://id.nlm.nih.gov/mesh/D014376Virulence710169510VirulenceCODI 2014–765MinCiencias 111571250266RoR:03bp5hc83RoR:03fd5ne08PublicationORIGINALBaenaAndres_2019_Differential_Determinants_Virulence.pdfBaenaAndres_2019_Differential_Determinants_Virulence.pdfArtículo de investigaciónapplication/pdf3405802https://bibliotecadigital.udea.edu.co/bitstreams/a8e7ef5c-2843-4e58-9940-e5a959e7ac59/downloadc8263603d040e5b4d1da44c1380b0af1MD51trueAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://bibliotecadigital.udea.edu.co/bitstreams/3fb4a5b7-0db1-4362-8cc3-9ad9266d1d56/download8a4605be74aa9ea9d79846c1fba20a33MD52falseAnonymousREADTEXTBaenaAndres_2019_Differential_Determinants_Virulence.pdf.txtBaenaAndres_2019_Differential_Determinants_Virulence.pdf.txtExtracted texttext/plain76658https://bibliotecadigital.udea.edu.co/bitstreams/d146e2ac-233e-4ac3-b47d-ec85595fd050/downloadc05cea781430f3f6a03068cf0fe9b920MD53falseAnonymousREADTHUMBNAILBaenaAndres_2019_Differential_Determinants_Virulence.pdf.jpgBaenaAndres_2019_Differential_Determinants_Virulence.pdf.jpgGenerated Thumbnailimage/jpeg16889https://bibliotecadigital.udea.edu.co/bitstreams/1a836dd3-cff5-4f3d-b355-62f22bbab33f/download7d09e1f4c50a3cd49da9c69467579d25MD54falseAnonymousREAD10495/43136oai:bibliotecadigital.udea.edu.co:10495/431362025-03-26 23:11:54.194http://creativecommons.org/licenses/by-nc-nd/2.5/co/open.accesshttps://bibliotecadigital.udea.edu.coRepositorio Institucional de la Universidad de Antioquiaaplicacionbibliotecadigitalbiblioteca@udea.edu.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