Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)

Autores:: Bados, Juan Pablo
Gómez, Jazmín
Pérez, Alejandra
Salazar, Jhoan
Marín, Mauricio

Tipo de recurso:: Article of journal

Fecha de publicación:: 2025

Institución:: Universidad Pedagógica y Tecnológica de Colombia

Repositorio:: RiUPTC: Repositorio Institucional UPTC

Idioma:

id	REPOUPTC2_f64bf3b0ce469d167d055286c25de2f1
oai_identifier_str	oai:repositorio.uptc.edu.co:001/21455
network_acronym_str	REPOUPTC2
network_name_str	RiUPTC: Repositorio Institucional UPTC
repository_id_str
dc.title.spa.fl_str_mv	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
title	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
spellingShingle	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia) Diagnosis Plant virology RT-qPCR Sequencing Solanaceae Tomato Diagnóstico Virología vegetal RT-qPCR Secuenciación Solanaceae Tomate
title_short	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
title_full	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
title_fullStr	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
title_full_unstemmed	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
title_sort	Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)
dc.creator.fl_str_mv	Bados, Juan Pablo Gómez, Jazmín Pérez, Alejandra Salazar, Jhoan Marín, Mauricio
dc.contributor.author.eng.fl_str_mv	Bados, Juan Pablo Gómez, Jazmín Pérez, Alejandra Salazar, Jhoan Marín, Mauricio
dc.subject.none.fl_str_mv	Diagnosis Plant virology RT-qPCR Sequencing Solanaceae Tomato Diagnóstico Virología vegetal RT-qPCR Secuenciación Solanaceae Tomate
topic	Diagnosis Plant virology RT-qPCR Sequencing Solanaceae Tomato Diagnóstico Virología vegetal RT-qPCR Secuenciación Solanaceae Tomate
publishDate	2025
dc.date.accessioned.none.fl_str_mv	2025-01-01 00:00:00 2026-04-16T17:45:36Z
dc.date.available.none.fl_str_mv	2025-01-01 00:00:00
dc.date.issued.none.fl_str_mv	2025-01-01
dc.type.spa.fl_str_mv	Artículo de revista
dc.type.coar.fl_str_mv	http://purl.org/coar/resource_type/c_2df8fbb1
dc.type.coar.none.fl_str_mv	http://purl.org/coar/resource_type/c_6501
dc.type.driver.none.fl_str_mv	info:eu-repo/semantics/article
dc.type.local.eng.fl_str_mv	Journal article
dc.type.version.none.fl_str_mv	info:eu-repo/semantics/publishedVersion
dc.type.content.none.fl_str_mv	Text
dc.type.coarversion.none.fl_str_mv	http://purl.org/coar/version/c_970fb48d4fbd8a85
format	http://purl.org/coar/resource_type/c_6501
status_str	publishedVersion
dc.identifier.issn.none.fl_str_mv	2011-2173
dc.identifier.uri.none.fl_str_mv	https://repositorio.uptc.edu.co/handle/001/21455
dc.identifier.doi.none.fl_str_mv	10.19053/uptc.24223719.18368
dc.identifier.eissn.none.fl_str_mv	2422-3719
dc.identifier.url.none.fl_str_mv	https://doi.org/10.19053/uptc.24223719.18368
identifier_str_mv	2011-2173 10.19053/uptc.24223719.18368 2422-3719
url	https://repositorio.uptc.edu.co/handle/001/21455 https://doi.org/10.19053/uptc.24223719.18368
dc.language.iso.none.fl_str_mv
language_invalid_str_mv
dc.relation.references.none.fl_str_mv	Alcalá, R., S. Coşkan, M. Londoño, and J. Polston. 2017. Genome sequence of Southern tomato virus in asymptomatic tomato “Sweet Hearts”. Genome Announc. 5(7), 1-2. Doi: https://doi.org/10.1128/genomeA.01374-16 Álvarez-Yepes, D., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2017. Secuenciación del genoma del Potato yellow vein virus (PYVV) y desarrollo de una prueba molecular para su detección. Bioagro 29(1), 3-14. Chaves, G., K. Cubillos, and M. Guzmán-Barney. 2014. First report of recombination in Potato yellow vein virus (PYVV) in Colombia. Trop. Plant Pathol. 39(3), 234-241. Doi: https://doi.org/10.1590/S1982-56762014000300007 Edgar, R.C., R.M. Drive, and M. Valley. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5), 1792-1797. Doi: https://doi.org/10.1093/nar/gkh340 Elvira-González, L., C. Carpino, A. Alfaro-Fernández, M.I. Font-San Ambrosio, R. Peiró, L. Rubio, and L. Galipienso. 2018. A sensitive real-time RT-PCR reveals a high incidence of Southern tomato virus (STV) in Spanish tomato crops. Span. J. Agric. Res. 16(3), e1008. Doi: https://doi.org/10.5424/sjar/2018163-12961 Elvira-González, L., V. Medina, L. Rubio, and L. Galipienso. 2020. The persistent southern tomato virus modifies miRNA expression without inducing symptoms and cell ultra-structural changes. Eur. J. Plant Pathol. 156(2), 615-622. Doi: https://doi.org/10.1007/s10658-019-01911-y Elvira-González, L., A.V. Puchades, C. Carpino, A. Alfaro-Fernández, M.I. Font-San-Ambrosio, L. Rubio, and L. Galipienso. 2017. Fast detection of Southern tomato virus by one-step transcription loop-mediated isothermal amplification (RT-LAMP). J. Virol. Methods 241(3), 11-14. Doi: https://doi.org/10.1016/j.jviromet.2016.12.004 FAO. 2022. FAOSTAT Crops and livestock products - Tomato. In: https://www.fao.org/faostat/en/; consulted: June, 2024. Gallo, Y., P.A. Gutiérrez, and M. Marín, M, 2020a. Identificación de virus de RNA en cultivos de tomate del oriente de Antioquia (Colombia) por secuenciación de nueva generación (NGS). Rev. U.D.C.A Act. & Div. Cient. 23(1), e1414. Doi: http://doi.org/10.31910/rudca.v23.n1.2020.1414 Gallo, Y., L. Muñoz, L. Toro, P.A. Gutiérrez, and M. Marín. 2020b. Detección de virus de ARN en cultivos de tomate del Oriente Antioqueño mediante secuenciación de alto rendimiento y RT-qPCR. Bioagro 32(3), 147-158. García, A., S. Giraldo, M. Higuita, R. Hoyos, M. Marín, and P. Gutiérrez. 2023. Detection of RNA viruses in potato seed-tubers from northern Antioquia (Colombia). Rev. Ceres 70(5), 1-10. Doi: https://doi.org/10.1590/0034-737x202370050013 Gil, J.F., J.M. Cotes, and M. Marín. 2013. Incidencia visual de síntomas asociados a enfermedades virales en cultivos de papa de Colombia. Rev. Bio. Agron. 11(2), 101-110. Green, K.J., C.N. Funke, J. Chojnacky, R.A. Alvarez-Quinto, J.B. Ochoa, D.F. Quito-Avila, and A.V. Karasev. 2020. Potato virus Y (PVY) isolates from Solanum betaceum represent three novel recombinants within the PVYN strain group and are unable to systemically spread in potato. Phytopathology 110(9), 1588-1596. Doi: https://doi.org/10.1094/PHYTO-04-20-0111-R Guzmán, M., L. Franco-Lara, D. Rodríguez, L. Vargas, and J.E. Fierro. 2012. Yield losses in Solanum tuberosum Group Phureja cultivar Criolla Colombia in plants with symptoms of PYVV in field trials. Am. J. Potato Res. 89(6), 438-447. Doi: https://doi.org/10.1007/s12230-012-9265-0 Hao, X., Y. Zheng, B. Cui, and B. Xiang. 2023. Localization of southern tomato virus (STV) in tomato tissues. J. Plant Dis. Prot. 130, 1143-1147. Doi: https://doi.org/10.1007/s41348-023-00729-5 Henao-Díaz, E., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2013. Análisis filogenético de aislamientos del Potato virus Y (PVY) obtenidos en cultivos de papa (Solanum tuberosum) y tomate de árbol (Solanum betaceum) en Colombia. Actual. Biol. 35(99), 219-232. Doi: https://doi.org/10.17533/udea.acbi.329120 Hernández-Guzmán, A.K. and M. Guzmán-Barney. 2014. Detección del virus del amarillamiento de las nervaduras de la hoja de la papa en diferentes órganos de Solanum tuberosum grupo Phureja cv Criolla Colombia utilizando RT-PCR convencional y en tiempo real. Rev. Colomb. Biotecnol. 16(1), 74-85. Doi: https://doi.org/10.15446/rev.colomb.biote.v16n1.44226 Karasev, A.V. and S.M. Gray. 2013. Continuous and emerging challenges of Potato virus Y in potato. Annu. Rev. Phytopathol. 51, 571-586. Doi: https://doi.org/10.1146/annurev-phyto-082712-102332 Livieratos, I., E. Eliasco, G. Muller, R. Olsthoorn, L. Salazar, W. Pleij, and R.H.A. Coutts. 2004. Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite genome and conserved 3’-terminal structures among members of the genus Crinivirus. J. Gen. Virol. 85(7), 2065-2075. Doi: https://doi.org/10.1099/vir.0.79910-0 López, R., C. Asensio, M. Gúzman, and N. Boonham. 2006. Development of real-time and conventional RT-PCR assays for the detection of Potato yellow vein virus (PYVV). J. Virol. Methods 136(1-2), 24-29. Doi: https://doi.org/10.1016/j.jviromet.2006.03.026 Marín, M. and P. Gutiérrez. 2016. Principios de virología molecular de plantas tropicales. Corpoica, Bogota. Doi: https://doi.org/10.21930/978-958-740-229-2 MinAgricultura, Ministerio de Agricultura y Desarrollo Rural Colombia. 2021. Agrone: área, producción y rendimiento nacional por cultivo - tomate. In: www.agronet.gov.co/estadistica/Paginas/home.aspx; consulted: June, 2024. Morales, F., P. Tamayo, M. Castaño, C. Olaya, A. Martínez, and A. Velasco. 2009. Enfermedades virales del tomate (Solanum lycopersicum) en Colombia. Fitopatol. Colomb. 33(1), 23-27. Muñoz, L., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2016. Detección y secuenciación del genoma del Potato Virus Y (PVY) que infecta plantas de tomate en Antioquia, Colombia. Bioagro 28(2), 69-80. Muñoz, L., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2017. Secuenciación del genoma completo del Potato yellow vein virus (PYVV) en tomate (Solanum lycopersicum) en Colombia. Acta Biol. Colomb. 22(1), 5-17. Doi: https://doi.org/10.15446/abc.v22n1.59211 Nie, X. and R.P. Singh. 2001. A novel usage of random primers for multiplex RT-PCR detection of virus and viroid in aphids, leaves and tubers. J. Virol. Methods 91(1), 37-49. Doi: https://doi.org/10.1016/S0166-0934(00)00242-1 Offei, S.K., N. Arciniegas, G. Muller, M. Guzmán, L.F. Salazar, and R.H. Coutts. 2004. Molecular variation of Potato yellow vein virus isolates. Arch. Virol. 49(4), 821-827. Doi: https://doi.org/10.1007/s00705-003-0250-2 Ogawa, T., Y. Tomitaka, A. Nakagawa, and K. Ohshima. 2008. Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res. 131(2), 199-212. Doi: https://doi.org/10.1016/j.virusres.2007.09.010 Pagán, I. 2022. Transmission through seeds: The unknown life of plant viruses. PLoS Pathog. 18(8), e1010707. Doi: https://doi.org/10.1371/journal.ppat.1010707 Petrov, N. 2014. Damaging effects of tomato mosaic virus and Potato virus Y on tomato plants. Sci. Technol. 4(6), 56-60. Prigigallo, M.I., M. Križnik, D. De Paola, D. Catalano, K. Gruden, M.M. Finetti-Sialer, and F. Cillo. 2019. Potato virus Y infection alters small RNA metabolism and immune response in tomato. Viruses 11(12), e1100. Doi: https://doi.org/10.3390/v11121100 Rívarez, M.P.S., A. Pecman, K. Bačnik, O. Maksimović, A. Vučurović, G. Seljak, N. Mehle, I. Gutiérrez-Aguirre, M. Ravnikar, and D. Kutnjak. 2023. In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem. Microbiome 11(1), 60. Doi: https://doi.org/10.1186/s40168-023-01500-6 Rívarez, M.P.S., A. Vučurović, N. Mehle, M. Ravnikar, and D. Kutnjak. 2021. Global advances in tomato virome research: current status and the impact of high-throughput sequencing. Front Microbiol. 12, 671925. Doi: https://doi.org/10.3389/fmicb.2021.671925 Rodríguez, M.H., N.E. Niño, J. Cutler, J. Langer, F. Casierra-Posada, D. Miranda, M. Bandte, and C. Büttner. 2016. Certificación de material vegetal sano en Colombia: un análisis crítico de oportunidades y retos para controlar enfermedades ocasionadas por virus. Rev. Colomb. Cienc. Hortic. 10(1), 164-175. Doi: http://dx.doi.org/10.17584/rcch.2016v10i1.4921 Sabanadzovic, S., R.A.Valverde, J.K. Brown, R.R. Martin, and I.E. Tzanetakis. 2009. Southern tomato virus: The link between the families Totiviridae and Partitiviridae. Virus Res. 140(1-2), 130-137. Doi: https://doi.org/10.1016/j.virusres.2008.11.018 Salazar, L., G. Muller, M. Querci, J. Zapata, and R. Owens. 2000. Potato yellow vein virus: its host range, distribution in South America and identification as a Crinivirus transmitted by Trialeurodes vaporariorum. Ann. Appl. Biol. 137(1), 7-19. Doi: https://doi.org/10.1111/j.1744-7348.2000.tb00052.x Singh, M., R.P. Singh, and M.S. Fageria. 2012. Optimization of a Real-Time RT-PCR assay and its comparison with ELISA, conventional RT-PCR and the grow-out test for large scale diagnosis of potato virus Y in dormant potato tubers. Am. J. Potato Res. 90(1), 43-50. Doi: https://doi.org/10.1007/s12230-012-9274-z Tamayo, P. and P. Jaramillo. 2013. Enfermedades del tomate, pimentón, ají y berenjena en Colombia. Guía para su diagnóstico y manejo. Corpoica, Rionegro, Colombia. Doi: https://doi.org/10.21930/978-958-740-166-0 Tamura, K., G. Stecher, and S. Kumar. 2021. MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Mol. Biol. Evol. 38(7), 3022-3027. Doi: https://doi.org/10.1093/molbev/msab120 Tsedaley, B. 2015. A review paper on Potato virus Y (PVY) biology, economic importance and its managements. J. Biol. Agric. Healthc. 5(9), 110-127. Vaca-Vaca, J.C., J.F. Betancur-Pérez, and K. López-López. 2012. Distribución y diversidad genética de Begomovirus que infectan tomate (Solanum lycopersicum L.) en Colombia. Rev. Colomb. Biotecnol. 14(1), 60-76. Villamil-Garzón, A., W.J. Cuellar, and M. Guzmán-Barney. 2014. Natural co-infection of Solanum tuberosum crops by the Potato yellow vein virus and potyvirus in Colombia. Agron. Colomb. 32(2), 213-223. Doi: https://doi.org/10.15446/agron.colomb.v32n2.43968
dc.relation.citationendpage.none.fl_str_mv	14
dc.relation.citationissue.eng.fl_str_mv	1
dc.relation.citationstartpage.none.fl_str_mv	1
dc.relation.citationvolume.eng.fl_str_mv	19
dc.relation.ispartofjournal.eng.fl_str_mv	Revista Colombiana de Ciencias Hortícolas
dc.relation.bitstream.none.fl_str_mv	https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/18368/15301
dc.rights.none.fl_str_mv	Revista Colombiana de Ciencias Hortícolas - 2024
dc.rights.uri.none.fl_str_mv	http://creativecommons.org/licenses/by-nc-sa/4.0
dc.rights.accessrights.none.fl_str_mv	info:eu-repo/semantics/openAccess
dc.rights.coar.none.fl_str_mv	http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv	Revista Colombiana de Ciencias Hortícolas - 2024 http://creativecommons.org/licenses/by-nc-sa/4.0 http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv	openAccess
dc.format.mimetype.none.fl_str_mv	application/pdf
dc.publisher.eng.fl_str_mv	Sociedad Colombiana de Ciencias Hortícolas-SCCH and Universidad Pedagógica y Tecnológica de Colombia-UPTC
dc.source.none.fl_str_mv	https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/18368
institution	Universidad Pedagógica y Tecnológica de Colombia
bitstream.url.fl_str_mv	https://repositorio.uptc.edu.co/bitstreams/f9c54beb-fdca-4557-9171-ab1a3d6968d4/download
bitstream.checksum.fl_str_mv	e46e4045f1c7058be2bacf1677d4111e
bitstream.checksumAlgorithm.fl_str_mv	MD5
repository.name.fl_str_mv	Repositorio Institucional UPTC
repository.mail.fl_str_mv	bdigital@metabiblioteca.com
_version_	1881674008133369856
spelling	Bados, Juan PabloGómez, JazmínPérez, AlejandraSalazar, JhoanMarín, Mauricio2025-01-01 00:00:002026-04-16T17:45:36Z2025-01-01 00:00:002025-01-012011-2173https://repositorio.uptc.edu.co/handle/001/2145510.19053/uptc.24223719.183682422-3719https://doi.org/10.19053/uptc.24223719.18368application/pdfSociedad Colombiana de Ciencias Hortícolas-SCCH and Universidad Pedagógica y Tecnológica de Colombia-UPTCRevista Colombiana de Ciencias Hortícolas - 2024http://creativecommons.org/licenses/by-nc-sa/4.0info:eu-repo/semantics/openAccessThis work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.http://purl.org/coar/access_right/c_abf2https://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/view/18368DiagnosisPlant virologyRT-qPCRSequencingSolanaceaeTomatoDiagnósticoVirología vegetalRT-qPCRSecuenciaciónSolanaceaeTomateMolecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)Artículo de revistahttp://purl.org/coar/resource_type/c_6501http://purl.org/coar/resource_type/c_2df8fbb1info:eu-repo/semantics/articleJournal articleinfo:eu-repo/semantics/publishedVersionTexthttp://purl.org/coar/version/c_970fb48d4fbd8a85Alcalá, R., S. Coşkan, M. Londoño, and J. Polston. 2017. Genome sequence of Southern tomato virus in asymptomatic tomato “Sweet Hearts”. Genome Announc. 5(7), 1-2. Doi: https://doi.org/10.1128/genomeA.01374-16Álvarez-Yepes, D., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2017. Secuenciación del genoma del Potato yellow vein virus (PYVV) y desarrollo de una prueba molecular para su detección. Bioagro 29(1), 3-14.Chaves, G., K. Cubillos, and M. Guzmán-Barney. 2014. First report of recombination in Potato yellow vein virus (PYVV) in Colombia. Trop. Plant Pathol. 39(3), 234-241. Doi: https://doi.org/10.1590/S1982-56762014000300007Edgar, R.C., R.M. Drive, and M. Valley. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5), 1792-1797. Doi: https://doi.org/10.1093/nar/gkh340Elvira-González, L., C. Carpino, A. Alfaro-Fernández, M.I. Font-San Ambrosio, R. Peiró, L. Rubio, and L. Galipienso. 2018. A sensitive real-time RT-PCR reveals a high incidence of Southern tomato virus (STV) in Spanish tomato crops. Span. J. Agric. Res. 16(3), e1008. Doi: https://doi.org/10.5424/sjar/2018163-12961Elvira-González, L., V. Medina, L. Rubio, and L. Galipienso. 2020. The persistent southern tomato virus modifies miRNA expression without inducing symptoms and cell ultra-structural changes. Eur. J. Plant Pathol. 156(2), 615-622. Doi: https://doi.org/10.1007/s10658-019-01911-yElvira-González, L., A.V. Puchades, C. Carpino, A. Alfaro-Fernández, M.I. Font-San-Ambrosio, L. Rubio, and L. Galipienso. 2017. Fast detection of Southern tomato virus by one-step transcription loop-mediated isothermal amplification (RT-LAMP). J. Virol. Methods 241(3), 11-14. Doi: https://doi.org/10.1016/j.jviromet.2016.12.004FAO. 2022. FAOSTAT Crops and livestock products - Tomato. In: https://www.fao.org/faostat/en/; consulted: June, 2024.Gallo, Y., P.A. Gutiérrez, and M. Marín, M, 2020a. Identificación de virus de RNA en cultivos de tomate del oriente de Antioquia (Colombia) por secuenciación de nueva generación (NGS). Rev. U.D.C.A Act. & Div. Cient. 23(1), e1414. Doi: http://doi.org/10.31910/rudca.v23.n1.2020.1414Gallo, Y., L. Muñoz, L. Toro, P.A. Gutiérrez, and M. Marín. 2020b. Detección de virus de ARN en cultivos de tomate del Oriente Antioqueño mediante secuenciación de alto rendimiento y RT-qPCR. Bioagro 32(3), 147-158.García, A., S. Giraldo, M. Higuita, R. Hoyos, M. Marín, and P. Gutiérrez. 2023. Detection of RNA viruses in potato seed-tubers from northern Antioquia (Colombia). Rev. Ceres 70(5), 1-10. Doi: https://doi.org/10.1590/0034-737x202370050013Gil, J.F., J.M. Cotes, and M. Marín. 2013. Incidencia visual de síntomas asociados a enfermedades virales en cultivos de papa de Colombia. Rev. Bio. Agron. 11(2), 101-110.Green, K.J., C.N. Funke, J. Chojnacky, R.A. Alvarez-Quinto, J.B. Ochoa, D.F. Quito-Avila, and A.V. Karasev. 2020. Potato virus Y (PVY) isolates from Solanum betaceum represent three novel recombinants within the PVYN strain group and are unable to systemically spread in potato. Phytopathology 110(9), 1588-1596. Doi: https://doi.org/10.1094/PHYTO-04-20-0111-RGuzmán, M., L. Franco-Lara, D. Rodríguez, L. Vargas, and J.E. Fierro. 2012. Yield losses in Solanum tuberosum Group Phureja cultivar Criolla Colombia in plants with symptoms of PYVV in field trials. Am. J. Potato Res. 89(6), 438-447. Doi: https://doi.org/10.1007/s12230-012-9265-0Hao, X., Y. Zheng, B. Cui, and B. Xiang. 2023. Localization of southern tomato virus (STV) in tomato tissues. J. Plant Dis. Prot. 130, 1143-1147. Doi: https://doi.org/10.1007/s41348-023-00729-5Henao-Díaz, E., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2013. Análisis filogenético de aislamientos del Potato virus Y (PVY) obtenidos en cultivos de papa (Solanum tuberosum) y tomate de árbol (Solanum betaceum) en Colombia. Actual. Biol. 35(99), 219-232. Doi: https://doi.org/10.17533/udea.acbi.329120Hernández-Guzmán, A.K. and M. Guzmán-Barney. 2014. Detección del virus del amarillamiento de las nervaduras de la hoja de la papa en diferentes órganos de Solanum tuberosum grupo Phureja cv Criolla Colombia utilizando RT-PCR convencional y en tiempo real. Rev. Colomb. Biotecnol. 16(1), 74-85. Doi: https://doi.org/10.15446/rev.colomb.biote.v16n1.44226Karasev, A.V. and S.M. Gray. 2013. Continuous and emerging challenges of Potato virus Y in potato. Annu. Rev. Phytopathol. 51, 571-586. Doi: https://doi.org/10.1146/annurev-phyto-082712-102332Livieratos, I., E. Eliasco, G. Muller, R. Olsthoorn, L. Salazar, W. Pleij, and R.H.A. Coutts. 2004. Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite genome and conserved 3’-terminal structures among members of the genus Crinivirus. J. Gen. Virol. 85(7), 2065-2075. Doi: https://doi.org/10.1099/vir.0.79910-0López, R., C. Asensio, M. Gúzman, and N. Boonham. 2006. Development of real-time and conventional RT-PCR assays for the detection of Potato yellow vein virus (PYVV). J. Virol. Methods 136(1-2), 24-29. Doi: https://doi.org/10.1016/j.jviromet.2006.03.026Marín, M. and P. Gutiérrez. 2016. Principios de virología molecular de plantas tropicales. Corpoica, Bogota. Doi: https://doi.org/10.21930/978-958-740-229-2MinAgricultura, Ministerio de Agricultura y Desarrollo Rural Colombia. 2021. Agrone: área, producción y rendimiento nacional por cultivo - tomate. In: www.agronet.gov.co/estadistica/Paginas/home.aspx; consulted: June, 2024.Morales, F., P. Tamayo, M. Castaño, C. Olaya, A. Martínez, and A. Velasco. 2009. Enfermedades virales del tomate (Solanum lycopersicum) en Colombia. Fitopatol. Colomb. 33(1), 23-27.Muñoz, L., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2016. Detección y secuenciación del genoma del Potato Virus Y (PVY) que infecta plantas de tomate en Antioquia, Colombia. Bioagro 28(2), 69-80.Muñoz, L., P. Gutiérrez-Sánchez, and M. Marín-Montoya. 2017. Secuenciación del genoma completo del Potato yellow vein virus (PYVV) en tomate (Solanum lycopersicum) en Colombia. Acta Biol. Colomb. 22(1), 5-17. Doi: https://doi.org/10.15446/abc.v22n1.59211Nie, X. and R.P. Singh. 2001. A novel usage of random primers for multiplex RT-PCR detection of virus and viroid in aphids, leaves and tubers. J. Virol. Methods 91(1), 37-49. Doi: https://doi.org/10.1016/S0166-0934(00)00242-1Offei, S.K., N. Arciniegas, G. Muller, M. Guzmán, L.F. Salazar, and R.H. Coutts. 2004. Molecular variation of Potato yellow vein virus isolates. Arch. Virol. 49(4), 821-827. Doi: https://doi.org/10.1007/s00705-003-0250-2Ogawa, T., Y. Tomitaka, A. Nakagawa, and K. Ohshima. 2008. Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res. 131(2), 199-212. Doi: https://doi.org/10.1016/j.virusres.2007.09.010Pagán, I. 2022. Transmission through seeds: The unknown life of plant viruses. PLoS Pathog. 18(8), e1010707. Doi: https://doi.org/10.1371/journal.ppat.1010707Petrov, N. 2014. Damaging effects of tomato mosaic virus and Potato virus Y on tomato plants. Sci. Technol. 4(6), 56-60.Prigigallo, M.I., M. Križnik, D. De Paola, D. Catalano, K. Gruden, M.M. Finetti-Sialer, and F. Cillo. 2019. Potato virus Y infection alters small RNA metabolism and immune response in tomato. Viruses 11(12), e1100. Doi: https://doi.org/10.3390/v11121100Rívarez, M.P.S., A. Pecman, K. Bačnik, O. Maksimović, A. Vučurović, G. Seljak, N. Mehle, I. Gutiérrez-Aguirre, M. Ravnikar, and D. Kutnjak. 2023. In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem. Microbiome 11(1), 60. Doi: https://doi.org/10.1186/s40168-023-01500-6Rívarez, M.P.S., A. Vučurović, N. Mehle, M. Ravnikar, and D. Kutnjak. 2021. Global advances in tomato virome research: current status and the impact of high-throughput sequencing. Front Microbiol. 12, 671925. Doi: https://doi.org/10.3389/fmicb.2021.671925Rodríguez, M.H., N.E. Niño, J. Cutler, J. Langer, F. Casierra-Posada, D. Miranda, M. Bandte, and C. Büttner. 2016. Certificación de material vegetal sano en Colombia: un análisis crítico de oportunidades y retos para controlar enfermedades ocasionadas por virus. Rev. Colomb. Cienc. Hortic. 10(1), 164-175. Doi: http://dx.doi.org/10.17584/rcch.2016v10i1.4921Sabanadzovic, S., R.A.Valverde, J.K. Brown, R.R. Martin, and I.E. Tzanetakis. 2009. Southern tomato virus: The link between the families Totiviridae and Partitiviridae. Virus Res. 140(1-2), 130-137. Doi: https://doi.org/10.1016/j.virusres.2008.11.018Salazar, L., G. Muller, M. Querci, J. Zapata, and R. Owens. 2000. Potato yellow vein virus: its host range, distribution in South America and identification as a Crinivirus transmitted by Trialeurodes vaporariorum. Ann. Appl. Biol. 137(1), 7-19. Doi: https://doi.org/10.1111/j.1744-7348.2000.tb00052.xSingh, M., R.P. Singh, and M.S. Fageria. 2012. Optimization of a Real-Time RT-PCR assay and its comparison with ELISA, conventional RT-PCR and the grow-out test for large scale diagnosis of potato virus Y in dormant potato tubers. Am. J. Potato Res. 90(1), 43-50. Doi: https://doi.org/10.1007/s12230-012-9274-zTamayo, P. and P. Jaramillo. 2013. Enfermedades del tomate, pimentón, ají y berenjena en Colombia. Guía para su diagnóstico y manejo. Corpoica, Rionegro, Colombia. Doi: https://doi.org/10.21930/978-958-740-166-0Tamura, K., G. Stecher, and S. Kumar. 2021. MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Mol. Biol. Evol. 38(7), 3022-3027. Doi: https://doi.org/10.1093/molbev/msab120Tsedaley, B. 2015. A review paper on Potato virus Y (PVY) biology, economic importance and its managements. J. Biol. Agric. Healthc. 5(9), 110-127.Vaca-Vaca, J.C., J.F. Betancur-Pérez, and K. López-López. 2012. Distribución y diversidad genética de Begomovirus que infectan tomate (Solanum lycopersicum L.) en Colombia. Rev. Colomb. Biotecnol. 14(1), 60-76.Villamil-Garzón, A., W.J. Cuellar, and M. Guzmán-Barney. 2014. Natural co-infection of Solanum tuberosum crops by the Potato yellow vein virus and potyvirus in Colombia. Agron. Colomb. 32(2), 213-223. Doi: https://doi.org/10.15446/agron.colomb.v32n2.43968141119Revista Colombiana de Ciencias Hortícolashttps://revistas.uptc.edu.co/index.php/ciencias_horticolas/article/download/18368/15301PublicationOREORE.xmltext/xml2912https://repositorio.uptc.edu.co/bitstreams/f9c54beb-fdca-4557-9171-ab1a3d6968d4/downloade46e4045f1c7058be2bacf1677d4111eMD51falseAnonymousREAD001/21455oai:repositorio.uptc.edu.co:001/214552026-04-20 14:27:59.975http://creativecommons.org/licenses/by-nc-sa/4.0metadata.onlyhttps://repositorio.uptc.edu.coRepositorio Institucional UPTCbdigital@metabiblioteca.com

Molecular detection of three RNA viruses in tomato (Solanum lycopersicum L.) leaf tissue and seeds in Antioquia (Colombia)

Publicaciones similares