Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations

eng: The development of CYP2D6 has been attributed to the need of earth-dwelling animals to detoxify toxic xenobiotics (phytoalexins) present in plants. This hypothesis has been extrapolated to humans, but is yet unconfirmed. Therefore, we studied two Amerindian populations as the best available mod...

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Fecha de publicación:
2022
Institución:
Universidad de Caldas
Repositorio:
Repositorio Institucional U. Caldas
Idioma:
eng
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oai:repositorio.ucaldas.edu.co:ucaldas/17679
Acceso en línea:
https://repositorio.ucaldas.edu.co/handle/ucaldas/17679
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Emberá
Panamá
Grupo étnico
Colombia
Genética humana
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http://purl.org/coar/access_right/c_abf2
id REPOUCALDA_8e1d5d1d6bb15d1b13b3918c56f3af49
oai_identifier_str oai:repositorio.ucaldas.edu.co:ucaldas/17679
network_acronym_str REPOUCALDA
network_name_str Repositorio Institucional U. Caldas
repository_id_str
dc.title.none.fl_str_mv Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
title Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
spellingShingle Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
Emberá
Panamá
Grupo étnico
Colombia
Genética humana
title_short Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
title_full Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
title_fullStr Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
title_full_unstemmed Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
title_sort Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populations
dc.subject.none.fl_str_mv Emberá
Panamá
Grupo étnico
Colombia
Genética humana
topic Emberá
Panamá
Grupo étnico
Colombia
Genética humana
description eng: The development of CYP2D6 has been attributed to the need of earth-dwelling animals to detoxify toxic xenobiotics (phytoalexins) present in plants. This hypothesis has been extrapolated to humans, but is yet unconfirmed. Therefore, we studied two Amerindian populations as the best available model to test the effect of selection through diet on human CYP2D6 evolution. The frequency of sparteine poor metabolizers in Ngawbe was 4.4% (n = 344), while the frequency in Embera was 2.2% (n = 153). Among Ngawbe and Embera, CYP2D6*4 (allelic frequencies for each tribe, respectively: 0.171; 0.14), CYP2D6*6 (0.005; 0.011) and CYP2D6*10 (0.175; 0.069) were detected, while CYP2D6*3, CYP2D6*5, CYP2D6*9 and CYP2D6*16 were absent. All poor metabolizers possessed either CYP2D6*4 or CYP2D6*6 and there were no disagreements between genotypic and phenotypic data. The total frequency of mutant alleles showed no difference among Amerindians or when compared to Caucasians. It was higher than in Chinese, since the frequency of CYP2D6*4 was higher in Amerindians. XbaI restriction fragment length polymorphisms haplotypes were very homogeneous in Amerindians, because the only fragment that hybridized with the CYP2D6 cDNA probe was the 29 kb (not 42/44 kb or 11.5/13 kb). This indicated no gene cluster recombinations that generate insertions or deletions. We propose that in earlier hominids and humans, CYP2D6 had increasingly become a vestigial characteristic unconstrained by dietary stressors, as a result of cultural survival strategies. Human CYP2D6 evolution was preferentially affected by random genetic drift, and not by adaptive or purifying selection.
publishDate 2022
dc.date.none.fl_str_mv 2022-05-26T23:08:04Z
2022-05-26T23:08:04Z
2022-05
dc.type.none.fl_str_mv Artículo de revista
http://purl.org/coar/resource_type/c_6501
Image
Text
info:eu-repo/semantics/article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_2df8fbb1
dc.identifier.none.fl_str_mv https://repositorio.ucaldas.edu.co/handle/ucaldas/17679
url https://repositorio.ucaldas.edu.co/handle/ucaldas/17679
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 228
217
9 (2)
Pardo, Mauricio, Bibliografía sobre Indígenas Chocó
Pharmacogenetics-London
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
rights_invalid_str_mv http://purl.org/coar/access_right/c_abf2
dc.format.none.fl_str_mv 11 Páginas
application/pdf
image/png
application/pdf
dc.publisher.none.fl_str_mv London
publisher.none.fl_str_mv London
dc.source.none.fl_str_mv https://europepmc.org/article/med/10376769
institution Universidad de Caldas
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Comparative evolutionary pharmacogenetics of CYP2D6 in Ngawbe and EmberaAmerindians of Panama and Colombia:role of selection versus drift in world populationsEmberáPanamáGrupo étnicoColombiaGenética humanaeng: The development of CYP2D6 has been attributed to the need of earth-dwelling animals to detoxify toxic xenobiotics (phytoalexins) present in plants. This hypothesis has been extrapolated to humans, but is yet unconfirmed. Therefore, we studied two Amerindian populations as the best available model to test the effect of selection through diet on human CYP2D6 evolution. The frequency of sparteine poor metabolizers in Ngawbe was 4.4% (n = 344), while the frequency in Embera was 2.2% (n = 153). Among Ngawbe and Embera, CYP2D6*4 (allelic frequencies for each tribe, respectively: 0.171; 0.14), CYP2D6*6 (0.005; 0.011) and CYP2D6*10 (0.175; 0.069) were detected, while CYP2D6*3, CYP2D6*5, CYP2D6*9 and CYP2D6*16 were absent. All poor metabolizers possessed either CYP2D6*4 or CYP2D6*6 and there were no disagreements between genotypic and phenotypic data. The total frequency of mutant alleles showed no difference among Amerindians or when compared to Caucasians. It was higher than in Chinese, since the frequency of CYP2D6*4 was higher in Amerindians. XbaI restriction fragment length polymorphisms haplotypes were very homogeneous in Amerindians, because the only fragment that hybridized with the CYP2D6 cDNA probe was the 29 kb (not 42/44 kb or 11.5/13 kb). This indicated no gene cluster recombinations that generate insertions or deletions. We propose that in earlier hominids and humans, CYP2D6 had increasingly become a vestigial characteristic unconstrained by dietary stressors, as a result of cultural survival strategies. Human CYP2D6 evolution was preferentially affected by random genetic drift, and not by adaptive or purifying selection.spa: El desarrollo del CYP2D6 se ha atribuido a la necesidad de los animales terrestres de desintoxicar los xenobióticos tóxicos (fitoalexinas) presentes en las plantas. Esta hipótesis se ha extrapolado a los humanos, pero aún no se ha confirmado. Por lo tanto, estudiamos dos poblaciones amerindias como el mejor modelo disponible para probar el efecto de la selección a través de la dieta en la evolución del CYP2D6 humano. La frecuencia de metabolizadores pobres de esparteína en Ngawbe fue del 4,4% (n = 344), mientras que la frecuencia en Embera fue del 2,2% (n = 153). Entre los Ngawbe y los Embera se detectó el CYP2D6*4 (frecuencias alélicas para cada tribu, respectivamente: 0,171; 0,14), el CYP2D6*6 (0,005; 0,011) y el CYP2D6*10 (0,175; 0,069), mientras que el CYP2D6*3, el CYP2D6*5, el CYP2D6*9 y el CYP2D6*16 estaban ausentes. Todos los metabolizadores pobres poseían el CYP2D6*4 o el CYP2D6*6 y no hubo discrepancias entre los datos genotípicos y fenotípicos. La frecuencia total de alelos mutantes no mostró diferencias entre los amerindios ni en comparación con los caucásicos. Fue mayor que en los chinos, ya que la frecuencia de CYP2D6*4 fue mayor en los amerindios. Los haplotipos de los polimorfismos de longitud de fragmentos de restricción XbaI fueron muy homogéneos en los amerindios, ya que el único fragmento que hibridó con la sonda de ADNc CYP2D6 fue el de 29 kb (no el de 42/44 kb ni el de 11,5/13 kb). Esto indica que no hay recombinaciones de grupos de genes que generen inserciones o deleciones. Proponemos que en los primeros homínidos y en los humanos, el CYP2D6 se había convertido cada vez más en una característica vestigial no limitada por los estresores de la dieta, como resultado de las estrategias culturales de supervivencia. La evolución de la CYP2D6 humana se vio afectada preferentemente por la deriva genética aleatoria, y no por la selección adaptativa o purificadora.London2022-05-26T23:08:04Z2022-05-26T23:08:04Z2022-05Artículo de revistahttp://purl.org/coar/resource_type/c_6501ImageTextinfo:eu-repo/semantics/articlehttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_2df8fbb111 Páginasapplication/pdfimage/pngapplication/pdfhttps://repositorio.ucaldas.edu.co/handle/ucaldas/17679https://europepmc.org/article/med/10376769eng2282179 (2)Pardo, Mauricio, Bibliografía sobre Indígenas ChocóPharmacogenetics-Londonhttp://purl.org/coar/access_right/c_abf2Eichelbaum; Griese; Inaba; Arias.oai:repositorio.ucaldas.edu.co:ucaldas/176792024-07-16T21:48:45Z