Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana
Figuras, tablas
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2025
- Institución:
- Universidad de Caldas
- Repositorio:
- Repositorio Institucional U. Caldas
- Idioma:
- spa
- OAI Identifier:
- oai:repositorio.ucaldas.edu.co:ucaldas/21916
- Acceso en línea:
- https://repositorio.ucaldas.edu.co/handle/ucaldas/21916
- Palabra clave:
- 570 - Biología
1. Ciencias Naturales
Bosque seco
ddRADseq
Flujo de trabajo bioinformático
Hidroituango
Secuenciación de nueva generación
Biología
- Rights
- License
- https://creativecommons.org/licenses/by-nc-nd/4.0/
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Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| title |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| spellingShingle |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana 570 - Biología 1. Ciencias Naturales Bosque seco ddRADseq Flujo de trabajo bioinformático Hidroituango Secuenciación de nueva generación Biología |
| title_short |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| title_full |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| title_fullStr |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| title_full_unstemmed |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| title_sort |
Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana |
| dc.contributor.none.fl_str_mv |
Orjuela Rodríguez, Marcela Rodríguez-Rey, Ghennie Tatiana |
| dc.subject.none.fl_str_mv |
570 - Biología 1. Ciencias Naturales Bosque seco ddRADseq Flujo de trabajo bioinformático Hidroituango Secuenciación de nueva generación Biología |
| topic |
570 - Biología 1. Ciencias Naturales Bosque seco ddRADseq Flujo de trabajo bioinformático Hidroituango Secuenciación de nueva generación Biología |
| description |
Figuras, tablas |
| publishDate |
2025 |
| dc.date.none.fl_str_mv |
2025-02-03T16:39:32Z 2025-02-03T16:39:32Z 2025-01-03 |
| dc.type.none.fl_str_mv |
Trabajo de grado - Pregrado http://purl.org/coar/resource_type/c_7a1f Text info:eu-repo/semantics/article |
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http://purl.org/coar/resource_type/c_2df8fbb1 |
| dc.identifier.none.fl_str_mv |
https://repositorio.ucaldas.edu.co/handle/ucaldas/21916 Universidad de Caldas Repositorio Institucional Universidad de Caldas repositorio.ucaldas.edu.co |
| url |
https://repositorio.ucaldas.edu.co/handle/ucaldas/21916 |
| identifier_str_mv |
Universidad de Caldas Repositorio Institucional Universidad de Caldas repositorio.ucaldas.edu.co |
| dc.language.none.fl_str_mv |
spa |
| language |
spa |
| dc.relation.none.fl_str_mv |
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https://creativecommons.org/licenses/by-nc-nd/4.0/ Atribución-NoComercial-SinDerivadas 4.0 Internacional (CC BY-NC-ND 4.0) |
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Universidad de Caldas Facultad de Ciencias Exactas y Naturales Manizales Biología |
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Universidad de Caldas Facultad de Ciencias Exactas y Naturales Manizales Biología |
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Universidad de Caldas |
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Genómica de poblaciones: nuevas perspectivas en el estudio de la diversidad genética de una especie amenazada y un flujo de trabajo para la ancestralidad humana570 - Biología1. Ciencias NaturalesBosque secoddRADseqFlujo de trabajo bioinformáticoHidroituangoSecuenciación de nueva generaciónBiologíaFiguras, tablasEng: The utilization of population genomics tools in various biological contexts is of significant value; however, the establishment of optimal bioinformatics workflows is imperative to ensure the reliability of the resulting data. Objective: Develop bioinformatics workflows in the domain of population genomics. Methods: Acquisition of genomic data through RADseq and exome methodologies, followed by the development and testing of bioinformatics workflows to ascertain their effectiveness. The effectiveness of the workflows was evaluated in two distinct contexts.The first context involved the estimation of genetic diversity and population structuring of T. sernai (Passeriformes: Tyrannidae), a species that is endangered. The second context involved the estimation of the degree of ancestry of 15 Colombian participants of the Origen project. Results: The analysis of T. sernai revealed significant genetic variability, characterized by an excess of heterozygosity. Additionally, the absence of inbreeding was observed, along with a notable population structuring that followed a pattern of isolation by distance. Gene flow appears to be asymmetrical, with greater gene flow observed between the southern localities. Conversely, the Colombian ancestry was predominantly European, with minor contributions from African and Native American lineages. This was accomplished by implementing a specialized workflow for exome data, which facilitates the scaling of this type of analysis in the future. Conclusion: The proper implementation of bioinformatics workflows enables the integration of population genomics data in contexts such as conservation and medicine.Spa: as herramientas de genómica de poblaciones son muy valiosas en diversos contextos biológicos, sin embargo es necesario el establecimiento de flujos de trabajo bioinformáticos óptimos para asegurar la fiabilidad de estos datos. Objetivo: Desarrollar flujos de trabajo bioinformáticos en genómica de poblaciones. Métodos: Se obtuvieron datos genómicos con metódologías de RADseq y exómica. Se desarrollaron flujos bioinformáticos y se probó la efectividad de estos en dos contextos. El primero estimando la diversidad genética y estructuración poblacional de Thryophilus sernai (Passeriformes: Tyrannidae), una especie amenazada. El segundo estimando el grado de ancestría de 15 participantes colombianos del proyecto Origen. Resultados: T. sernai posee gran variabilidad genética, presentando un exceso de heterocigosidad, adicionalmente, se presenta una aparente ausencia de endogamia, así como una fuerte estructuración poblacional siguiendo un patrón de aislamiento por distancia. El flujo genético no parece simétrico, ya que parece existir mayor flujo génico entre las localidades ubicadas al sur. Por otra parte, se estimó la ancestría colombiana siendo principalmente europea con proporciones menores africanas y nativoamericas. Esto último se logró aplicando un flujo de trabajo específico para datos exómicos. El establecimiento de este flujo permite el escalamiento de este tipo de análisis a futuro. Conclusión: La correcta implementación de flujos bioinformáticos permite la implementación de datos de genómica de poblaciones en contextos como la conservación y la medicina.PregradoSe secuenciaron muestras con ddRADseq y secuenciación de exóma completo. Los datos fueron procesados y filtrados para obtener archivos con lecturas de alta calidad, los cuales posteriormente fueron aplicados en diferentes softwares para obtener los resultados de genómica de poblaciones.Biólogo(a)Universidad de CaldasFacultad de Ciencias Exactas y NaturalesManizalesBiologíaOrjuela Rodríguez, MarcelaRodríguez-Rey, Ghennie TatianaRamírez-Guarín, Juan Camilo2025-02-03T16:39:32Z2025-02-03T16:39:32Z2025-01-03Trabajo de grado - Pregradohttp://purl.org/coar/resource_type/c_7a1fTextinfo:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_2df8fbb124 páginasapplication/pdfapplication/pdfapplication/pdfapplication/pdfhttps://repositorio.ucaldas.edu.co/handle/ucaldas/21916Universidad de CaldasRepositorio Institucional Universidad de Caldasrepositorio.ucaldas.edu.cospaAdhikari, K., Fontanil, T., Cal, S., Mendoza-Revilla, J., Fuentes-Guajardo, M., Chacón-Duque, J.-C., Al-Saadi, F., Johansson, J. 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CrossMap: A versatile tool for coordinate conversion between genome assemblies. Bioinformatics (Oxford, England), 30(7), 1006-1007. https://doi.org/10.1093/bioinformatics/btt730https://creativecommons.org/licenses/by-nc-nd/4.0/Atribución-NoComercial-SinDerivadas 4.0 Internacional (CC BY-NC-ND 4.0)http://purl.org/coar/access_right/c_abf2oai:repositorio.ucaldas.edu.co:ucaldas/219162025-02-04T08:01:09Z |