Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos

Ilustraciones, mapas, fotos

Autores:

Tipo de recurso:

Fecha de publicación:: 2023

Institución:: Universidad de Caldas

Repositorio:: Repositorio Institucional U. Caldas

Idioma:: eng
spa

id	REPOUCALDA_29752ddd8826092accbb0db959f57ebe
oai_identifier_str	oai:repositorio.ucaldas.edu.co:ucaldas/19613
network_acronym_str	REPOUCALDA
network_name_str	Repositorio Institucional U. Caldas
repository_id_str
dc.title.none.fl_str_mv	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
title	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
spellingShingle	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos Andes colombianos Especies cripticas Filogenia Taxonomía integrativa Anoles andinos Biología
title_short	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
title_full	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
title_fullStr	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
title_full_unstemmed	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
title_sort	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos
dc.contributor.none.fl_str_mv	Gutiérrez Cárdenas, Paul David Alfonso Grupo de Ecología y Diversidad de Anfibios y Reptiles (Categoría B)
dc.subject.none.fl_str_mv	Andes colombianos Especies cripticas Filogenia Taxonomía integrativa Anoles andinos Biología
topic	Andes colombianos Especies cripticas Filogenia Taxonomía integrativa Anoles andinos Biología
description	Ilustraciones, mapas, fotos
publishDate	2023
dc.date.none.fl_str_mv	2023-09-26T22:02:10Z 2023-09-26T22:02:10Z 2023-09-26
dc.type.none.fl_str_mv	Trabajo de grado - Pregrado http://purl.org/coar/resource_type/c_7a1f Text info:eu-repo/semantics/bachelorThesis
dc.type.coarversion.fl_str_mv	http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.identifier.none.fl_str_mv	https://repositorio.ucaldas.edu.co/handle/ucaldas/19613 Universidad de Caldas Repositorio Institucional Universidad de Caldas https://repositorio.ucaldas.edu.co/
url	https://repositorio.ucaldas.edu.co/handle/ucaldas/19613 https://repositorio.ucaldas.edu.co/
identifier_str_mv	Universidad de Caldas Repositorio Institucional Universidad de Caldas
dc.language.none.fl_str_mv	eng spa
language	eng spa
dc.relation.none.fl_str_mv	Alibardi, L. (2003) Adaptation to the land: the skin of reptiles in comparison to that of amphibians and endotherm amniotes. Journal of Experimental Zoology Part B-Molecular and Developmental Evolution, 298 (1), 12–41. Ardila-Marín, D.A., Gaitán-Reyes, D.G. & Hernández-Ruz, E.J. (2008) Biología reproductiva de una población de Anolis tolimensis (Sauria: Iguanidae) en los Andes colombianos. Caldasia, 30 (1), 151–159. Ardila-Marín, D.A., Gaitán-Reyes, D.G. & Hernández-Ruz, E.J. (2008) Biología reproductiva de una población de Anolis tolimensis (Sauria: Iguanidae) en los Andes colombianos. Caldasia, 30 (1), 151–159. Arosemena, F.A. & Ibáñez, R. (1993) Una especie nueva de Anolis (Squamata: Iguanidae) del grupo fuscoauratus de Fortuna, Panamá. Revista de Biología Tropical, 41 (2), 267– 272. Arosemena, F.A. & Ibáñez, R. (1994) Un saurio nuevo del Anolis (Reptilia: Polychridae), grupo fuscoauratus, de las Tierras Altas de Chiriqui, Panama. Caribbean Journal of Science, 30 (3–4), 222–227. Ayala-Varela, F., Valverde, S., Poe, S., Narváez, A.E., Yánez-Muñoz, M.H. & TorresCarvajal, O. (2021) A new giant anole (Squamata: Iguanidae: Dactyloinae) from southwestern Ecuador. Zootaxa, 4991 (2), 295–317. Barbour, T. (1932) New Anoles. Proceedings of the New England Zoölogical Club, 12, 97– 102. Bock, B.C., Ortega, A.M., Zapata, A.M. & Páez, V. (2009) Microgeographic body size variation in a high elevation Andean anole (Anolis mariarum; Squamata, Polychrotidae). Revista de Biología Tropical, 57 (4), 1253–1262. Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C., Xie, D., Suchard, M. A., Rambaut, A. & Drummond, A. J. (2014) BEAST 2: A Software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 10 (4), e1003537. Bouckaert, R., Vaughan, T.G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A. & Drummond, A.J. (2019) BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15 (4), e1006650. Boulenger, G.A. (1908) Descriptions of new batrachians and reptiles discovered by Mr. M.G. Palmer in south-western Colombia. Annals and Magazine of Natural History, 8 (2), 515– 522. Butler, M.A., Sawyer, S.A. & Losos, J.B. (2007) Sexual dimorphism and adaptive radiation in Anolis lizards. Nature, 447 (7141), 202–205. Cadena, C.D., Zapata, F. & Jiménez, I. (2018) Issues and perspectives in species delimitation using phenotypic data: atlantean evolution in Darwin’s finches. Systematic Biology, 67 (2),181–194. Cádiz, A., Nagata, N., Díaz, L.M., Suzuki-Ohno, Y., Echenique-Díaz, L.M., Akashi, H.D & Kawata, M. (2018) Factors affecting interspecific differences in genetic divergence among populations of Anolis lizards in Cuba. Zoological Letters, 4 (1), 1–12. Caicedo-Martínez, L.S., Mejía-Fontecha, Y.I., Rojas-Morales, J.A., Caicedo-Portilla, J.R. & Ramírez-Chaves, H.E. (2022) Tail abnormalities in four lizard species (Anolis, Hemidactylus, Iguana, Kentropyx) from Colombia. Herpetology Notes, 15, 797–803. Calsbeek, R., Knouft, J.H. & Smith, T.B. (2006) Variation in scale numbers is consistent with ecologically based natural selection acting within and between lizard species. Evolutionary Ecology, 20, 377–394. Cannatella, D.C. & de Queiroz, K. (1989) Phylogenetic systematics of the anoles: is a new taxonomy warranted? Systematic Zoology, 38 (1), 57–69. Card, D.C., Schield, D.R. & Castoe, T.A. (2018) Plasticity and local adaptation explain lizard cold tolerance. Molecular Ecology, 27 (9), 2173–2175. Castañeda, M.R. & de Queiroz, K. (2011) Phylogenetic relationships of the Dactyloa clade of Anolis lizards based on nuclear and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 61 (3), 784–800. Castro-Herrera, F. & Vargas-Salinas, F. (2008) Anfibios y reptiles en el departamento del Valle del Cauca, Colombia. Biota Colombiana, 9 (2), 251–277. Charrad, M., Ghazzali, N., Boiteau, V. & Niknafs, A. (2014) NbClust: an R package for determining the relevant number of clusters in a data set. Journal of statistical software, 61 (6), 1–36. Cope, E.D. (1875). On the Batrachia and Reptilia of Costa Rica with notes on the herpetology and ichthyology of Nicaragua and Peru. Journal of the Academy of Natural Sciences of Philadelphia N.S, 8: 93–183. Cortés‐Parra, C., Calderón‐Espinosa, M.L. & Jerez, A. (2022) Claws and toepads in mainland and island Anolis (Squamata: Dactyloidae): Different adaptive radiations with intersectional morphospatial zones. Journal of anatomy, 240 (5), 850–866. D’Angiolella, A., Gamble, T., Ávila-Pires, T.C.S., Colli, G.R., Noonan, B.P. & Vitt, L.J. (2011) Anolis chrysolepis Duméril and Bibron, 1837 (Squamata:Iguanidae) revisited: Molecular phylogeny and taxonomy of the Anolis chrysolepis species group. Bulletin of the Museum of Comparative Zoology, 160 (2), 35–63. D’Angiolella, A.B., Klaczko, J., Rodrigues, M.T. & Avila-Pires, T.C.S. (2016) Hemipenial morphology and diversity in South American anoles (Squamata: Dactyloidae). Canadian Journal of Zoology, 94 (4), 251–256. Díaz, L. M., Cádiz, A., Velazco, K. & Kawata, M. (2022) A new dwarf green anole (Squamata: Dactyloidae) of the Anolis carolinensis species group, from western Cuba. Caribbean Herpetology, 84, 1–16. Egea, E., David, B., Choné, T., Laurin, B., Féral, J.P. & Chenuil, A. (2016) Morphological and genetic analyses reveal a cryptic species complex in the echinoid Echinocardium cordatum and rule out a stabilizing selection explanation. Molecular Phylogenetics and Evolution, 94, 207–220. Espitia-Sanabria, D.E. & Cárdenas-Ortega, M.S. (2021) Anolis tolimensis. Predation. Herpetological Review, 52, 854. Fišer, C., Robinson, C.T. & Malard, F. (2018) Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology, 27 (3), 613–635. Fujisawa, T. & Barraclough, T.G. (2013) Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Systematic biology, 62 (5), 707–724. Gegzna, V. (2023) biostat. R package. https://gegznav.github.io/RcmdrPlugin.biostat/, https://github.com/GegznaV/RcmdrPlugin.biostat/. Acceso el 28 de marzo del 2023. Glor, R.E., Losos, J.B. & Larson, A. (2005) Out of Cuba: Overwater dispersal and speciation among lizards in the Anolis carolinensis subgroup. Molecular Ecology, 14 (8), 2419– 2432. Glor, R.E., Vitt, L.J. & Larson, A. (2001) A molecular phylogenetic analysis of diversification in Amazonian Anolis lizards. Molecular Ecology, 10 (11), 2661–2668. Greenberg, N. (2002) Ethological aspects of stress in a model lizard, Anolis carolinensis. Integrative and Comparative Biology, 42 (3), 526–540. Grisales-Martínez, F.A., Velasco, J.A., Bolívar, W., Williams, E.E. & Daza, J.M. (2017) The taxonomic and phylogenetic status of some poorly known Anolis species from the Andes of Colombia with the description of a nomen nudum taxon. Zootaxa, 4303 (2), 213–230. Guarnizo, C.E., Werneck, F.P., Giugliano, L.G., Santos, M.G., Fenker, J., Sousa, L. & Colli, G.R. (2016) Cryptic lineages and diversification of an endemic anole lizard (Squamata, Dactyloidae) of the Cerrado hotspot. Molecular Phylogenetics and Evolution, 94, 279– 289. Hillis, D.M. (2019) Species delimitation in herpetology. Journal of Herpetology, 53 (1), 3– 12. Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35 (2), 518–522. Hofmann, E.P., Nicholson, K.E., Luque-Montes, I.R., Köhler, G., Cerrato-Mendoza, C.A., Medina-Flores, M., Wilson, L.D. & Townsend, J.H. (2019) Cryptic diversity, but to what extent? Discordance between single-locus species delimitation methods within mainland Anoles (Squamata: Dactyloidae) of northern Central America. Frontiers in Genetics, 10, 11–13. Howell, B.K., Winchell, K.M. & Hagey, T.J. (2022) Geometric morphometrics reveal shape differences in the toes of urban lizards. Integrative Organismal Biology, 4 (1), obac028. ICZN (1999) International Code of Zoological Nomenclature. Fourth Edition. London: International Trust for Zoological Nomenclature, London, xxix + 306 pp. https://www.iczn.org/the-code/the-code-online/. Acceso el 20 de agosto del 2023. Jackman, T.R., Irschick, D.J., De Queiroz, K., Losos, J.B. & Larson, A. (2002) Molecular phylogenetic perspective on evolution of lizards of the Anolis grahami series. Journal of Experimental Zoology, 294 (1), 1–16. Jackman, T.R., Larson, A., De Queiroz, K. & Losos, J.B. (1999) Phylogenetic relationships and tempo of early diversification in Anolis lizards. Systematic Biology, 48 (2), 254–285. Jadin, R.C. & Smith, E.N. (2010) The hemipenis of Trimorphodon quadruplex. Herpetological Review, 41 (2), 157. Jombart, T. & Ahmed, I. (2011) adegenet 1.3-1: New tools for the analysis of genome-wide SNP data. Bioinformatics, 27 (21), 3070–3071. Jombart, T., Devillard, S. & Balloux, F. (2010) Discriminant analysis of principal components: A new method for the analysis of genetically structured populations. BMC Genetics, 11 (1), 94–94. Jones, G., Aydin, Z. & Oxelman, B. (2015) DISSECT: An assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent. Bioinformatics, 31 (7), 991–998. Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., Von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature methods, 14 (6), 587–589. Kassambara, A. & Mundt, F. (2017) factoextra. R package. https://cran.rproject.org/web/packages/factoextra/factoextra.pdf. Acceso 28 de marzo de 2023. Kassambara, A. (2017) Practical Guide to Cluster Analysis in R: Unsupervised Machine Learning. Vol 1. STHDA, 188 pp. Kirti, J.S. & Sodhi, J.S. (2007) Taxonomic significance of internal male reproductive organs of three Indian species of genus Areas Walker (Arctiidae: Lepidoptera). Journal of Entomological Research, 31 (2), 177–180. Klaczko, J., Ingram, T. & Losos, J. (2015) Genitals evolve faster than other traits in Anolis lizards. Journal of Zoology, 295 (1), 44–48. Klaver, C. & Böhme, W. (1986) Phylogeny and classification of the Chamaeleonidae (Sauria) with special reference to hemipenis morphology. Bonner Zoologische Monographien, 22, 1–64. Köhler, G. & Vesely, M. (2010) A revision of the Anolis sericeus complex with the resurrection of A. wellbornae and the description of a new species (Squamata: Polychrotidae). Herpetologica, 66 (2), 207–228. Köhler, G. (2014) Characters of external morphology used in Anolis taxonomy—Definition of terms, advice on usage, and illustrated examples. Zootaxa, 3774 (3), 201–257. Köhler, G., Ponce, M., Sunyer, J. & Batista, A. (2007) Four new species of anoles (genus Anolis) from the Serranía de Tabasará, west-central Panama (Squamata: Polychrotidae). Herpetologica, 63 (3), 375–391. Köhler, G., Zimmer, C., McGrath, K. & Hedges, S.B. (2019) A revision of the genus Audantia of Hispaniola with description of four new species (Reptilia: Squamata: Dactyloidae). Novitates caribaea, 14, 1–104. Kolbe, J.J., Larson, A., Losos, J.B. & de Queiroz, K. (2008) Admixture determines genetic diversity and population differentiation in the biological invasion of a lizard species. Biology Letters, 4 (4), 434–437. Lavoué, S., Miya, M., Arnegard, M.E., McIntyre, P.B., Mamonekene, V. & Nishida, M. (2011) Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence. Proceedings of the Royal Society B, 278 (1708), 1003–1008. Leal, M. & Rodríguez-Robles, J.A. (1997) Signalling displays during predator–prey interactions in a Puerto Rican anole, Anolis cristatellus. Animal Behaviour, 54 (5), 1147– 1154. Lecocq, T., Vereecken, N.J., Michez, D., Dellicour, S., Lhomme, P., Valterova, I. & Rasmont, P. (2013) Patterns of genetic and reproductive traits differentiation in mainland vs. Corsican populations of bumblebees. PLoS One, 8 (6), e65642. Lee, C.E. & Frost, B.W. (2002) Morphological stasis in the Eurytemora affinis species complex (Copepoda: Temoridae). Hydrobiologia, 480, 111–128. Lee, J.C. (1980) Variation and systematics of the Anolis sericeus complex (Sauria: Iguanidae). Copeia, 1980 (2), 310–320. Lilliefors, H.W. (1967) On the Kolmogorov-Smirnov test for normality with mean and variance unknown. Journal of the American statistical Association, 62 (318), 399–402. Llano-Mejía, J., Cortéz-Gómez, A.M. & Castro-Herrera, F. (2010) Lista de anfibios y reptiles del departamento del Tolima, Colombia. Biota Colombiana, 11 (1–2), 89–106. Losos, J. B. (2009) Lizards in an evolutionary tree: ecology and adaptive radiation of Anoles. Vol 1. University of California Press, Berkeley, 528 pp. Losos, J.B. (1990) Ecomorphology, performance capability, and scaling of West Indian Anolis lizards: an evolutionary analysis. Ecological Monographs, 60 (3), 369–388 Losos, J.B. (1994) Integrative approaches to evolutionary ecology: Anolis lizards as model systems. Annual Review of Ecology and Systematics, 25 (1), 467–493. Lovern, M.B., Holmes, M.M. & Wade, J. (2004) The green anole (Anolis carolinensis): a reptilian model for laboratory studies of reproductive morphology and behavior. Ilar Journal, 45 (1), 54–64. Macey, J.R., Larson, A., Ananjeva, N.B., Fang, Z. & Papenfuss, T.J. (1997) Two novel gene orders and the role of lightstrand replication in rearrangement of the vertebrate mitochondrial genome. Molecular Biology and Evolution, 14, 91–104. MacQueen, J. (1967) Some methods for classification and analysis of multivariate observations. In: Le Cam, L.M. & Neyman, J. (Eds.), Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability. Vol 1. University of California Press, Berkeley, pp. 281–297. Maechler, M. (2019) cluster. R package. https://mirrors.ucr.ac.cr/CRAN/web/packages/cluster/cluster.pdf. Acceso 28 de marzo del 2023. McCranie, J.R. & Köhler, G. (2015) The anoles (Reptilia: Squamata: Dactyloidae: Anolis: Norops) of Honduras. Systematics, distribution, and conservation. Bulletin of the Museum of Comparative Zoology, 161 (11), 1–280. McDonald, J.H. (2014) Handbook of Biological Statistics. Vol 1. Sparky House Publishing, Baltimore, 299 pp. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop, 1, 1–8. Miller, S.A., Dykes, D.D. & Polesky, H.F. (1988) A simple salting procedure for extracting DNA from human nucleated cells. Nucleic Acid Research, 16 (3), 1215. Moreno-Arias, R.A. & Calderón-Espinosa, M.L. (2016) Patterns of morphological diversification of mainland Anolis lizards from northwestern South America. Zoological Journal of the Linnean Society, 176 (3), 632–647. Moreno-Arias, R.A., Méndez-Galeano, M.A., Beltrán, I. & Vargas-Ramírez, M. (2023) Revealing anole diversity in the highlands of the Northern Andes: New and resurrected species of the Anolis heterodermus species group. Vertebrate Zoology, 73, 161–188. Myers, C.W. & Cadle, J.E. (2003) Points of view. Herpetological Review, 34 (4), 295–302. Myers, T.C., De Mello, P.L. & Glor, R.E. (2020) A morphometric assessment of species boundaries in a widespread anole lizard (Squamata: Dactyloidae). Biological Journal of the Linnean Society, 130 (4), 813–825. Nicholson, K.E. (2002) Phylogenetic analysis and a test of the current infrageneric classification of Norops (beta Anolis). Herpetological Monographs, 16 (1), 93–120. Nicholson, K.E., Glor, R.E., Kolbe, J.J., Larson, A., Blair Hedges, S. & Losos, J.B. (2005) Mainland colonization by island lizards. Journal of Biogeography, 32 (6), 929–938. Nicholson, K.E., Harmon, L.J. & Losos, J.B. (2007) Evolution of Anolis lizard dewlap diversity. PLoS One, 2 (3), 1–12. Nicholson, K.E., Crother, B.I., Guyer, C. & Savage, J.M. (2012) It is time for a new classification of anoles (Squamata: Dactyloidae). Zootaxa, 3477 (1), 1–108. Ord, T.J. & Martins, E.P. (2006) Tracing the origins of signal diversity in anole lizards: phylogenetic approaches to inferring the evolution of complex behaviour. Animal Behaviour, 71 (6), 1411–1429. Oufiero, C.E., Gartner, G.E.A., Adolph, S.C. & Garland, T.J. (2011) Latitudinal and climatic variation in body size and dorsal scale counts in Sceloporus lizards: a phylogenetic perspective. Evolution, 65 (12), 3590–3607. Páez, V.P., Bock, B.C., Estrada, J.J., Ortega, A.M., Daza, J.M. & Gutiérrez-Cárdenas, P.D. (2002) Guía de Campo de algunas Especies de Anfibios y Reptiles de Antioquia. MultiImpresos Ltda, Medellín, 136 pp. Paradis, E., Blomberg, S., Bolker, B., Brown, J., Claude, J., Cuong, H.S. & Desper, R. (2019) ape. R package. https://cran.stat.unipd.it/web/packages/ape/ape.pdf. Acceso el 28 de marzo del 2023. Pesantes, O.S. (1994) A method for preparing the hemipenis of preserved snakes. Journal of Herpetology, 28 (1), 93–95. Poe, S. (2004) Phylogeny of anoles. Herpetological Monographs, 18 (1), 37–89. Poe, S., Nieto-Montes de Oca, A., Torres-Carvajal, O., De Queiroz, K., Velasco, J.A., Truett, B. & Latella, I. (2017) A phylogenetic, biogeographic, and taxonomic study of all extant species of Anolis (Squamata; Iguanidae). Systematic biology, 66 (5), 663–697. Pons, J., Barraclough, T.G., Gomez-Zurita, J., Cardoso, A., Duran, D.P., Hazell, S., Kamoun, S., Sumlin, W.D. & Vogler, A.P. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology, 55 (4), 595–609. Prates, I., Melo-Sampaio, P.R., de Queiroz, K., Carnaval, A.C., Rodrigues, M.T. & de Oliveira Drummond, L. (2020) Discovery of a new species of Anolis lizards from Brazil and its implications for the historical biogeography of montane Atlantic Forest endemics. Amphibia-Reptilia, 41 (1), 87–103. Prates, I., Penna, A., Rodrigues, M.T. & Carnaval, A.C. (2018) Local adaptation in mainland anole lizards: Integrating population history and genome–environment associations. Ecology and Evolution, 8 (23), 11932–11944. Prates, I., Rivera, D., Rodrigues, M.T. & Carnaval, A.C. (2016) A mid‐Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards. Molecular ecology, 25 (20), 5174–5186. Puillandre, N., Brouillet, S. & Achaz, G. (2021) ASAP: assemble species by automatic partitioning. Molecular Ecology Resources, 21 (2), 609–620. Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic Barcode Gap Discovery form primary species delimitation. Molecular Ecology, 21 (8), 1864–1877. QGIS.org (2021). QGIS Geographic Information System. Open Source Geospatial Foundation Project. http://qgis.org. R Core Team (2022) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Rambaut, A. & Drummond, A.J. (2009) Tracer v1.5. http://beast.bio.ed.ac.uk/Tracer. Acceso el 28 de marzo del 2023. Rambaut, A. (2010) FigTree v1.3.1. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. http://tree.bio.ed.ac.uk/software/figtree/. Acceso el 28 de marzo del 2023. Robert, C.E. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32 (5), 1792–1797. Rojas-Morales, J.A., Arias-Monsalve, H.F. & González-Durán, G.A. (2014) Anfibios y reptiles de la región centro-sur del departamento de Caldas, Colombia. Biota Colombiana, 15 (1), 73–93. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61 (3), 539–542. Roughgarden, J. (1974) Niche width: biogeographic patterns among Anolis lizard populations. The American Naturalist, 108 (962), 429–442. Rubio-Rocha, L. & Agudelo-Sánchez, W. (2020) Anolis mariarum Barbour, 1932. Catálogo de Anfibios y Reptiles de Colombia, 6 (1), 1–8. Sanger, T.J., Losos, J.B. & Gibson‐Brown, J.J. (2008) A developmental staging series for the lizard genus Anolis: a new system for the integration of evolution, development, and ecology. Journal of Morphology, 269 (2), 129–137. Scherrer, R., Donihue, C.M., Reynolds, R.G., Losos, J.B. & Geneva, A.J. (2022) Dewlap colour variation in Anolis sagrei is maintained among habitats within islands of the West Indies. Journal of Evolutionary Biology, 35(5), 680–692 Singhal, S., Hoskin, C.J., Couper, P., Potter, S. & Moritz, C. (2018) A framework for resolving cryptic species: a case study from the lizards of the Australian wet tropics. Systematic Biology, 67 (6), 1061–1075. Smith, E.N. & Ferrari-Castro, J.A. (2008) A new species of jumping pitviper of the genus Atropoides (Serpentes: Viperidae: Crotalinae) from the Sierra de Botaderos and the Sierra La Muralla, Honduras. Zootaxa, 1948, 57−68 Smith, K.L., Harmon, L.J., Shoo, L.P. & Melville, J. (2011) Evidence of constrained phenotypic evolution in a cryptic species complex of agamid lizards. Evolution, 65 (4), 976–992. Tamura, K., Stecher, G. & Kumar, S. (2021) MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution, 38 (7), 3022–3027. Thorpe, R. S., & Baez, M. (1993). Geographic variation in scalation of the lizard Gallotia stehlini within the island of Gran Canaria. Biological Journal of the Linnean Society 48,75–87. Thorpe, R.S., Surget-Groba, Y. & Johansson, H. (2008) The relative importance of ecology and geographic isolation for speciation in anoles. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1506), 3071–3081. Tollis, M., Ausubel, G., Ghimire, D. & Boissinot, S. (2012) Multilocus phylogeographic and population genetic analysis of Anolis carolinensis: historical demography of a genomic model species. PLoS ONE, 7 (6), e38474. Trifinopoulos, J., Nguyen, L.M., Haeseler, A.V. & Minh, B.Q. (2016) W-IQ-Tree: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research, 44 (1), 232–235. Uetz, P., Freed, P., Aguilar, R. & Hošek. J. (2022) The Reptile Database, http://www.reptiledatabase.org. Acceso el 28 de marzo de 2023. Vats, L.K. & Vasu, V. (1993) A comparative account to evaluate the taxonomic importance of the male reproductive organs of click beetles (Coleoptera: Elateridae). Journal of Entomological Research, 17 (4), 233–238. Velasco, J.A. & Herrel, A. (2007) Ecomorphology of Anolis lizards of the Choco′ region in Colombia and comparisons with Greater Antillean ecomorphs. Biological Journal of the Linnean Society, 92 (1), 29–39. Velasco, J.A. & Hurtado-Gómez, J.P. (2014) A new green anole lizard of the "Dactyloa" clade (Squamata: Dactyloidae) from the Magdalena River valley of Colombia. Zootaxa, 3785 (2), 201–216. Wake, D.B., Roth, G. & Wake, M.H. (1983) On the problem of stasis in organismal evolution. Journal of Theoretical Biology, 101 (2), 211–224. Wegener, J.E., Gartner, G.E. & Losos, J.B. (2014) Lizard scales in an adaptive radiation: variation in scale number follows climatic and structural habitat diversity in Anolis lizards. Biological journal of the Linnean Society, 113 (2), 570–579. Werner, F. (1916) Bemerkungen über einige niedere Wirbeltiere der Anden von Kolumbien mit Beschreibungen neuer Arten. Zoologischer Anzeiger, 47, 301–311. Wickham, H. (2016) ggplot2: Elegant Graphics for Data Analysis. Springer, New York, 213 pp. Wickham, H., François, R., Henry, L. & Müller, K. (2022) dplyr. R package. https://cran.rhub.io/web/packages/dplyr/dplyr.pdf. Acceso el 28 de marzo del 2013 Wiley, E. (1978) The evolutionary species concept reconsidered. Systematic Biology, 27 (1), 17–26. Williams, E.E. (1976) South American anoles; the species groups. Papéis Avulsos de Zoologia, 29, 259–268. Williams, E.E., Rand, H., Rand, A.S. & O’Hara, R.J. (1995) A computer approach to the comparison and identification of species in difficult taxonomic groups. Breviora, 502, 1– 47. Yánez-Muñoz, M.H., Reyes-Puig, C., Reyes-Puig, J.P., Velasco, J.A., Ayala-Varela, F. & Torres-Carvajal, O. (2018) A new cryptic species of Anolis lizard from northwestern South America (Iguanidae, Dactyloinae). ZooKeys, 794, 135–163. Zaher, H. & Prudente, A.L.C. (2003) Hemipenes of Siphlophis (Serpentes, Xenodontinae) and techniques of hemipenial preparation in snakes: a response to Dowling. Herpetological Review, 34 (4),302–307. Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A. (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29 (22), 2869– 2876.
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess info:eu-repo/semantics/openAccess info:eu-repo/semantics/openAccess info:eu-repo/semantics/openAccess http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv	openAccess
rights_invalid_str_mv	http://purl.org/coar/access_right/c_abf2
dc.format.none.fl_str_mv	application/pdf application/pdf application/pdf application/pdf
dc.publisher.none.fl_str_mv	Facultad de Ciencias Exactas y Naturales Manizales Biología
publisher.none.fl_str_mv	Facultad de Ciencias Exactas y Naturales Manizales Biología
institution	Universidad de Caldas
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_	1836145028288741376
spelling	Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianosAndes colombianosEspecies cripticasFilogeniaTaxonomía integrativaAnoles andinosBiologíaIlustraciones, mapas, fotosspa:El grupo Anolis fuscoauratus comprende 23 especies reconocidas por su carácter críptico y similitudes en la coloración de sus abanicos gulares, entre las cuales se encuentra un pequeño subgrupo endémico de cuatro especies restringidas a los Andes colombianos. Estudios recientes revelaron que la evolución de este pequeño grupo de lagartijas andinas es muy compleja y podría albergar mayor diversidad de la que conocemos actualmente. Por esto, mediante un amplio muestreo y la aplicación de un marco taxonómico integrador, evaluamos la delimitación tres especies andinas del grupo A. fuscoauratus (A. antonii, A. mariarum y A. tolimensis) utilizando un conjunto de datos morfológicos (morfometría y escamación), hemipeniales y moleculares (un marcador mitocondrial). Nuestros resultados proporcionaron evidencia de la existencia de siete linajes evolutivos independientes en estos taxones andinos. También, revelaron el estado no monofilético de los taxones reconocidos previamente como A. antonii. Tres de estos linajes evolutivos independientes pueden ser identificados morfológicamente con base en el número de escamas entre las segundas cantales, el número de escamas postrostrales y el número de escamas entre la escama interparietal y la nuca. Discutimos algunos posibles escenarios taxonómicos para los linajes encontrados en el eje cafetero y la posible simpatría entre diferentes especies del grupo fuscoauratus. Todo lo anterior, sugiere que la diversidad existente en este grupo de lagartos es aún desconocida, por tanto, es necesario realizar un mayor muestreo taxonómico del grupo y adicionar conjuntos de datos ecológicos o comportamentales para apoyar la delimitación de los linajes aquí analizados.eng:The Anolis fuscoauratus group comprises 23 species recognized for their cryptic character and similarities in the coloration of their dewlap, among which is a small endemic subgroup of four species restricted to the Colombian andean. Recent studies revealed that the evolution of this small group of Andean lizards is very complex and could harbor greater diversity than we currently know. Therefore, through extensive sampling and the application of an integrative taxonomic framework, we evaluated the delimitation of three Andean species of group A. fuscoauratus (A. antonii, A. mariarum and A. tolimensis) using a set of morphological data (morphometry and scalation), hemipenial and molecular (a mitochondrial marker). Our results provided evidence of the existence of seven independent evolutionary lineages in these Andean taxa. They also revealed the non-monophyletic status of taxa previously recognized as A. antonii. Three of these independent evolutionary lineages can be identified morphologically based on the number of scales between the second canthal, the number of postrostral scales, and the number of scales between the interparietal scale and the nape scale. We discussed some possible taxonomic scenarios for the lineages found in the coffee belt and the possible sympathy between different species of the fuscoauratus group. All of the above suggests that the diversity existing in this group of lizards is still unknown, Therefore, it is necessary to carry out a greater taxonomic sampling of the group and to add sets of ecological or behavioral data to support the delimitation of the lineages analyzed here.1. Metodología / 1.1 Muestreo taxonómico / 1.2 Concepto de especie / 1.3 Datos moleculares / 1.3.1 Extracción, amplificación y secuenciación / 1.3.2 Análisis filogenéticos y delimitación de especies / 1.4 Datos morfológicos / 1.4.1 Caracteres morfológicos / 1.4.2 Morfología hemipenial / 1.4.3 Análisis univariado de los caracteres morfométricos / 1.4.4 Análisis multivariado de los caracteres morfométricos / 2. Resultados / 2.1 Análisis univariado / 2.2 Análisis multivariado / 2.3 Morfología hemipenial / 2.4 Análisis filogenéticos y delimitación de especies / 3. Discusión / 4. Conclusiones y recomendaciones / 5. AnexosUniversitarioBiólogo(a)Facultad de Ciencias Exactas y NaturalesManizalesBiologíaGutiérrez Cárdenas, Paul David AlfonsoGrupo de Ecología y Diversidad de Anfibios y Reptiles (Categoría B)Espitia Sanabria, Daniel Enrique2023-09-26T22:02:10Z2023-09-26T22:02:10Z2023-09-26Trabajo de grado - Pregradohttp://purl.org/coar/resource_type/c_7a1fTextinfo:eu-repo/semantics/bachelorThesishttp://purl.org/coar/version/c_970fb48d4fbd8a85application/pdfapplication/pdfapplication/pdfapplication/pdfhttps://repositorio.ucaldas.edu.co/handle/ucaldas/19613Universidad de CaldasRepositorio Institucional Universidad de Caldashttps://repositorio.ucaldas.edu.co/engspaAlibardi, L. (2003) Adaptation to the land: the skin of reptiles in comparison to that of amphibians and endotherm amniotes. Journal of Experimental Zoology Part B-Molecular and Developmental Evolution, 298 (1), 12–41.Ardila-Marín, D.A., Gaitán-Reyes, D.G. & Hernández-Ruz, E.J. (2008) Biología reproductiva de una población de Anolis tolimensis (Sauria: Iguanidae) en los Andes colombianos. Caldasia, 30 (1), 151–159.Ardila-Marín, D.A., Gaitán-Reyes, D.G. & Hernández-Ruz, E.J. (2008) Biología reproductiva de una población de Anolis tolimensis (Sauria: Iguanidae) en los Andes colombianos. Caldasia, 30 (1), 151–159.Arosemena, F.A. & Ibáñez, R. (1993) Una especie nueva de Anolis (Squamata: Iguanidae) del grupo fuscoauratus de Fortuna, Panamá. Revista de Biología Tropical, 41 (2), 267– 272.Arosemena, F.A. & Ibáñez, R. (1994) Un saurio nuevo del Anolis (Reptilia: Polychridae), grupo fuscoauratus, de las Tierras Altas de Chiriqui, Panama. Caribbean Journal of Science, 30 (3–4), 222–227.Ayala-Varela, F., Valverde, S., Poe, S., Narváez, A.E., Yánez-Muñoz, M.H. & TorresCarvajal, O. (2021) A new giant anole (Squamata: Iguanidae: Dactyloinae) from southwestern Ecuador. Zootaxa, 4991 (2), 295–317.Barbour, T. (1932) New Anoles. Proceedings of the New England Zoölogical Club, 12, 97– 102.Bock, B.C., Ortega, A.M., Zapata, A.M. & Páez, V. (2009) Microgeographic body size variation in a high elevation Andean anole (Anolis mariarum; Squamata, Polychrotidae). Revista de Biología Tropical, 57 (4), 1253–1262.Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C., Xie, D., Suchard, M. A., Rambaut, A. & Drummond, A. J. (2014) BEAST 2: A Software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 10 (4), e1003537.Bouckaert, R., Vaughan, T.G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A. & Drummond, A.J. (2019) BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15 (4), e1006650.Boulenger, G.A. (1908) Descriptions of new batrachians and reptiles discovered by Mr. M.G. Palmer in south-western Colombia. Annals and Magazine of Natural History, 8 (2), 515– 522.Butler, M.A., Sawyer, S.A. & Losos, J.B. (2007) Sexual dimorphism and adaptive radiation in Anolis lizards. Nature, 447 (7141), 202–205.Cadena, C.D., Zapata, F. & Jiménez, I. (2018) Issues and perspectives in species delimitation using phenotypic data: atlantean evolution in Darwin’s finches. Systematic Biology, 67 (2),181–194.Cádiz, A., Nagata, N., Díaz, L.M., Suzuki-Ohno, Y., Echenique-Díaz, L.M., Akashi, H.D & Kawata, M. (2018) Factors affecting interspecific differences in genetic divergence among populations of Anolis lizards in Cuba. Zoological Letters, 4 (1), 1–12.Caicedo-Martínez, L.S., Mejía-Fontecha, Y.I., Rojas-Morales, J.A., Caicedo-Portilla, J.R. & Ramírez-Chaves, H.E. (2022) Tail abnormalities in four lizard species (Anolis, Hemidactylus, Iguana, Kentropyx) from Colombia. Herpetology Notes, 15, 797–803.Calsbeek, R., Knouft, J.H. & Smith, T.B. (2006) Variation in scale numbers is consistent with ecologically based natural selection acting within and between lizard species. Evolutionary Ecology, 20, 377–394.Cannatella, D.C. & de Queiroz, K. (1989) Phylogenetic systematics of the anoles: is a new taxonomy warranted? Systematic Zoology, 38 (1), 57–69.Card, D.C., Schield, D.R. & Castoe, T.A. (2018) Plasticity and local adaptation explain lizard cold tolerance. Molecular Ecology, 27 (9), 2173–2175.Castañeda, M.R. & de Queiroz, K. (2011) Phylogenetic relationships of the Dactyloa clade of Anolis lizards based on nuclear and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 61 (3), 784–800.Castro-Herrera, F. & Vargas-Salinas, F. (2008) Anfibios y reptiles en el departamento del Valle del Cauca, Colombia. Biota Colombiana, 9 (2), 251–277.Charrad, M., Ghazzali, N., Boiteau, V. & Niknafs, A. (2014) NbClust: an R package for determining the relevant number of clusters in a data set. Journal of statistical software, 61 (6), 1–36.Cope, E.D. (1875). On the Batrachia and Reptilia of Costa Rica with notes on the herpetology and ichthyology of Nicaragua and Peru. Journal of the Academy of Natural Sciences of Philadelphia N.S, 8: 93–183.Cortés‐Parra, C., Calderón‐Espinosa, M.L. & Jerez, A. (2022) Claws and toepads in mainland and island Anolis (Squamata: Dactyloidae): Different adaptive radiations with intersectional morphospatial zones. Journal of anatomy, 240 (5), 850–866.D’Angiolella, A., Gamble, T., Ávila-Pires, T.C.S., Colli, G.R., Noonan, B.P. & Vitt, L.J. (2011) Anolis chrysolepis Duméril and Bibron, 1837 (Squamata:Iguanidae) revisited: Molecular phylogeny and taxonomy of the Anolis chrysolepis species group. Bulletin of the Museum of Comparative Zoology, 160 (2), 35–63.D’Angiolella, A.B., Klaczko, J., Rodrigues, M.T. & Avila-Pires, T.C.S. (2016) Hemipenial morphology and diversity in South American anoles (Squamata: Dactyloidae). Canadian Journal of Zoology, 94 (4), 251–256.Díaz, L. M., Cádiz, A., Velazco, K. & Kawata, M. (2022) A new dwarf green anole (Squamata: Dactyloidae) of the Anolis carolinensis species group, from western Cuba. Caribbean Herpetology, 84, 1–16.Egea, E., David, B., Choné, T., Laurin, B., Féral, J.P. & Chenuil, A. (2016) Morphological and genetic analyses reveal a cryptic species complex in the echinoid Echinocardium cordatum and rule out a stabilizing selection explanation. Molecular Phylogenetics and Evolution, 94, 207–220.Espitia-Sanabria, D.E. & Cárdenas-Ortega, M.S. (2021) Anolis tolimensis. Predation. Herpetological Review, 52, 854.Fišer, C., Robinson, C.T. & Malard, F. (2018) Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology, 27 (3), 613–635.Fujisawa, T. & Barraclough, T.G. (2013) Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Systematic biology, 62 (5), 707–724.Gegzna, V. (2023) biostat. R package. https://gegznav.github.io/RcmdrPlugin.biostat/, https://github.com/GegznaV/RcmdrPlugin.biostat/. Acceso el 28 de marzo del 2023.Glor, R.E., Losos, J.B. & Larson, A. (2005) Out of Cuba: Overwater dispersal and speciation among lizards in the Anolis carolinensis subgroup. Molecular Ecology, 14 (8), 2419– 2432.Glor, R.E., Vitt, L.J. & Larson, A. (2001) A molecular phylogenetic analysis of diversification in Amazonian Anolis lizards. Molecular Ecology, 10 (11), 2661–2668.Greenberg, N. (2002) Ethological aspects of stress in a model lizard, Anolis carolinensis. Integrative and Comparative Biology, 42 (3), 526–540.Grisales-Martínez, F.A., Velasco, J.A., Bolívar, W., Williams, E.E. & Daza, J.M. (2017) The taxonomic and phylogenetic status of some poorly known Anolis species from the Andes of Colombia with the description of a nomen nudum taxon. Zootaxa, 4303 (2), 213–230.Guarnizo, C.E., Werneck, F.P., Giugliano, L.G., Santos, M.G., Fenker, J., Sousa, L. & Colli, G.R. (2016) Cryptic lineages and diversification of an endemic anole lizard (Squamata, Dactyloidae) of the Cerrado hotspot. Molecular Phylogenetics and Evolution, 94, 279– 289.Hillis, D.M. (2019) Species delimitation in herpetology. Journal of Herpetology, 53 (1), 3– 12.Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35 (2), 518–522.Hofmann, E.P., Nicholson, K.E., Luque-Montes, I.R., Köhler, G., Cerrato-Mendoza, C.A., Medina-Flores, M., Wilson, L.D. & Townsend, J.H. (2019) Cryptic diversity, but to what extent? Discordance between single-locus species delimitation methods within mainland Anoles (Squamata: Dactyloidae) of northern Central America. Frontiers in Genetics, 10, 11–13.Howell, B.K., Winchell, K.M. & Hagey, T.J. (2022) Geometric morphometrics reveal shape differences in the toes of urban lizards. Integrative Organismal Biology, 4 (1), obac028.ICZN (1999) International Code of Zoological Nomenclature. Fourth Edition. London: International Trust for Zoological Nomenclature, London, xxix + 306 pp. https://www.iczn.org/the-code/the-code-online/. Acceso el 20 de agosto del 2023.Jackman, T.R., Irschick, D.J., De Queiroz, K., Losos, J.B. & Larson, A. (2002) Molecular phylogenetic perspective on evolution of lizards of the Anolis grahami series. Journal of Experimental Zoology, 294 (1), 1–16.Jackman, T.R., Larson, A., De Queiroz, K. & Losos, J.B. (1999) Phylogenetic relationships and tempo of early diversification in Anolis lizards. Systematic Biology, 48 (2), 254–285.Jadin, R.C. & Smith, E.N. (2010) The hemipenis of Trimorphodon quadruplex. Herpetological Review, 41 (2), 157.Jombart, T. & Ahmed, I. (2011) adegenet 1.3-1: New tools for the analysis of genome-wide SNP data. Bioinformatics, 27 (21), 3070–3071.Jombart, T., Devillard, S. & Balloux, F. (2010) Discriminant analysis of principal components: A new method for the analysis of genetically structured populations. BMC Genetics, 11 (1), 94–94.Jones, G., Aydin, Z. & Oxelman, B. (2015) DISSECT: An assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent. Bioinformatics, 31 (7), 991–998.Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., Von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature methods, 14 (6), 587–589.Kassambara, A. & Mundt, F. (2017) factoextra. R package. https://cran.rproject.org/web/packages/factoextra/factoextra.pdf. Acceso 28 de marzo de 2023.Kassambara, A. (2017) Practical Guide to Cluster Analysis in R: Unsupervised Machine Learning. Vol 1. STHDA, 188 pp.Kirti, J.S. & Sodhi, J.S. (2007) Taxonomic significance of internal male reproductive organs of three Indian species of genus Areas Walker (Arctiidae: Lepidoptera). Journal of Entomological Research, 31 (2), 177–180.Klaczko, J., Ingram, T. & Losos, J. (2015) Genitals evolve faster than other traits in Anolis lizards. Journal of Zoology, 295 (1), 44–48.Klaver, C. & Böhme, W. (1986) Phylogeny and classification of the Chamaeleonidae (Sauria) with special reference to hemipenis morphology. Bonner Zoologische Monographien, 22, 1–64.Köhler, G. & Vesely, M. (2010) A revision of the Anolis sericeus complex with the resurrection of A. wellbornae and the description of a new species (Squamata: Polychrotidae). Herpetologica, 66 (2), 207–228.Köhler, G. (2014) Characters of external morphology used in Anolis taxonomy—Definition of terms, advice on usage, and illustrated examples. Zootaxa, 3774 (3), 201–257.Köhler, G., Ponce, M., Sunyer, J. & Batista, A. (2007) Four new species of anoles (genus Anolis) from the Serranía de Tabasará, west-central Panama (Squamata: Polychrotidae). Herpetologica, 63 (3), 375–391.Köhler, G., Zimmer, C., McGrath, K. & Hedges, S.B. (2019) A revision of the genus Audantia of Hispaniola with description of four new species (Reptilia: Squamata: Dactyloidae). Novitates caribaea, 14, 1–104.Kolbe, J.J., Larson, A., Losos, J.B. & de Queiroz, K. (2008) Admixture determines genetic diversity and population differentiation in the biological invasion of a lizard species. Biology Letters, 4 (4), 434–437.Lavoué, S., Miya, M., Arnegard, M.E., McIntyre, P.B., Mamonekene, V. & Nishida, M. (2011) Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence. Proceedings of the Royal Society B, 278 (1708), 1003–1008.Leal, M. & Rodríguez-Robles, J.A. (1997) Signalling displays during predator–prey interactions in a Puerto Rican anole, Anolis cristatellus. Animal Behaviour, 54 (5), 1147– 1154.Lecocq, T., Vereecken, N.J., Michez, D., Dellicour, S., Lhomme, P., Valterova, I. & Rasmont, P. (2013) Patterns of genetic and reproductive traits differentiation in mainland vs. Corsican populations of bumblebees. PLoS One, 8 (6), e65642.Lee, C.E. & Frost, B.W. (2002) Morphological stasis in the Eurytemora affinis species complex (Copepoda: Temoridae). Hydrobiologia, 480, 111–128.Lee, J.C. (1980) Variation and systematics of the Anolis sericeus complex (Sauria: Iguanidae). Copeia, 1980 (2), 310–320.Lilliefors, H.W. (1967) On the Kolmogorov-Smirnov test for normality with mean and variance unknown. Journal of the American statistical Association, 62 (318), 399–402.Llano-Mejía, J., Cortéz-Gómez, A.M. & Castro-Herrera, F. (2010) Lista de anfibios y reptiles del departamento del Tolima, Colombia. Biota Colombiana, 11 (1–2), 89–106.Losos, J. B. (2009) Lizards in an evolutionary tree: ecology and adaptive radiation of Anoles. Vol 1. University of California Press, Berkeley, 528 pp.Losos, J.B. (1990) Ecomorphology, performance capability, and scaling of West Indian Anolis lizards: an evolutionary analysis. Ecological Monographs, 60 (3), 369–388Losos, J.B. (1994) Integrative approaches to evolutionary ecology: Anolis lizards as model systems. Annual Review of Ecology and Systematics, 25 (1), 467–493.Lovern, M.B., Holmes, M.M. & Wade, J. (2004) The green anole (Anolis carolinensis): a reptilian model for laboratory studies of reproductive morphology and behavior. Ilar Journal, 45 (1), 54–64.Macey, J.R., Larson, A., Ananjeva, N.B., Fang, Z. & Papenfuss, T.J. (1997) Two novel gene orders and the role of lightstrand replication in rearrangement of the vertebrate mitochondrial genome. Molecular Biology and Evolution, 14, 91–104.MacQueen, J. (1967) Some methods for classification and analysis of multivariate observations. In: Le Cam, L.M. & Neyman, J. (Eds.), Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability. Vol 1. University of California Press, Berkeley, pp. 281–297.Maechler, M. (2019) cluster. R package. https://mirrors.ucr.ac.cr/CRAN/web/packages/cluster/cluster.pdf. Acceso 28 de marzo del 2023.McCranie, J.R. & Köhler, G. (2015) The anoles (Reptilia: Squamata: Dactyloidae: Anolis: Norops) of Honduras. Systematics, distribution, and conservation. Bulletin of the Museum of Comparative Zoology, 161 (11), 1–280.McDonald, J.H. (2014) Handbook of Biological Statistics. Vol 1. Sparky House Publishing, Baltimore, 299 pp.Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop, 1, 1–8.Miller, S.A., Dykes, D.D. & Polesky, H.F. (1988) A simple salting procedure for extracting DNA from human nucleated cells. Nucleic Acid Research, 16 (3), 1215.Moreno-Arias, R.A. & Calderón-Espinosa, M.L. (2016) Patterns of morphological diversification of mainland Anolis lizards from northwestern South America. Zoological Journal of the Linnean Society, 176 (3), 632–647.Moreno-Arias, R.A., Méndez-Galeano, M.A., Beltrán, I. & Vargas-Ramírez, M. (2023) Revealing anole diversity in the highlands of the Northern Andes: New and resurrected species of the Anolis heterodermus species group. Vertebrate Zoology, 73, 161–188.Myers, C.W. & Cadle, J.E. (2003) Points of view. Herpetological Review, 34 (4), 295–302.Myers, T.C., De Mello, P.L. & Glor, R.E. (2020) A morphometric assessment of species boundaries in a widespread anole lizard (Squamata: Dactyloidae). Biological Journal of the Linnean Society, 130 (4), 813–825.Nicholson, K.E. (2002) Phylogenetic analysis and a test of the current infrageneric classification of Norops (beta Anolis). Herpetological Monographs, 16 (1), 93–120.Nicholson, K.E., Glor, R.E., Kolbe, J.J., Larson, A., Blair Hedges, S. & Losos, J.B. (2005) Mainland colonization by island lizards. Journal of Biogeography, 32 (6), 929–938.Nicholson, K.E., Harmon, L.J. & Losos, J.B. (2007) Evolution of Anolis lizard dewlap diversity. PLoS One, 2 (3), 1–12.Nicholson, K.E., Crother, B.I., Guyer, C. & Savage, J.M. (2012) It is time for a new classification of anoles (Squamata: Dactyloidae). Zootaxa, 3477 (1), 1–108.Ord, T.J. & Martins, E.P. (2006) Tracing the origins of signal diversity in anole lizards: phylogenetic approaches to inferring the evolution of complex behaviour. Animal Behaviour, 71 (6), 1411–1429.Oufiero, C.E., Gartner, G.E.A., Adolph, S.C. & Garland, T.J. (2011) Latitudinal and climatic variation in body size and dorsal scale counts in Sceloporus lizards: a phylogenetic perspective. Evolution, 65 (12), 3590–3607.Páez, V.P., Bock, B.C., Estrada, J.J., Ortega, A.M., Daza, J.M. & Gutiérrez-Cárdenas, P.D. (2002) Guía de Campo de algunas Especies de Anfibios y Reptiles de Antioquia. MultiImpresos Ltda, Medellín, 136 pp.Paradis, E., Blomberg, S., Bolker, B., Brown, J., Claude, J., Cuong, H.S. & Desper, R. (2019) ape. R package. https://cran.stat.unipd.it/web/packages/ape/ape.pdf. Acceso el 28 de marzo del 2023.Pesantes, O.S. (1994) A method for preparing the hemipenis of preserved snakes. Journal of Herpetology, 28 (1), 93–95.Poe, S. (2004) Phylogeny of anoles. Herpetological Monographs, 18 (1), 37–89.Poe, S., Nieto-Montes de Oca, A., Torres-Carvajal, O., De Queiroz, K., Velasco, J.A., Truett, B. & Latella, I. (2017) A phylogenetic, biogeographic, and taxonomic study of all extant species of Anolis (Squamata; Iguanidae). Systematic biology, 66 (5), 663–697.Pons, J., Barraclough, T.G., Gomez-Zurita, J., Cardoso, A., Duran, D.P., Hazell, S., Kamoun, S., Sumlin, W.D. & Vogler, A.P. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology, 55 (4), 595–609.Prates, I., Melo-Sampaio, P.R., de Queiroz, K., Carnaval, A.C., Rodrigues, M.T. & de Oliveira Drummond, L. (2020) Discovery of a new species of Anolis lizards from Brazil and its implications for the historical biogeography of montane Atlantic Forest endemics. Amphibia-Reptilia, 41 (1), 87–103.Prates, I., Penna, A., Rodrigues, M.T. & Carnaval, A.C. (2018) Local adaptation in mainland anole lizards: Integrating population history and genome–environment associations. Ecology and Evolution, 8 (23), 11932–11944.Prates, I., Rivera, D., Rodrigues, M.T. & Carnaval, A.C. (2016) A mid‐Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards. Molecular ecology, 25 (20), 5174–5186.Puillandre, N., Brouillet, S. & Achaz, G. (2021) ASAP: assemble species by automatic partitioning. Molecular Ecology Resources, 21 (2), 609–620.Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic Barcode Gap Discovery form primary species delimitation. Molecular Ecology, 21 (8), 1864–1877.QGIS.org (2021). QGIS Geographic Information System. Open Source Geospatial Foundation Project. http://qgis.org.R Core Team (2022) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.Rambaut, A. & Drummond, A.J. (2009) Tracer v1.5. http://beast.bio.ed.ac.uk/Tracer. Acceso el 28 de marzo del 2023.Rambaut, A. (2010) FigTree v1.3.1. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. http://tree.bio.ed.ac.uk/software/figtree/. Acceso el 28 de marzo del 2023.Robert, C.E. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32 (5), 1792–1797.Rojas-Morales, J.A., Arias-Monsalve, H.F. & González-Durán, G.A. (2014) Anfibios y reptiles de la región centro-sur del departamento de Caldas, Colombia. Biota Colombiana, 15 (1), 73–93.Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61 (3), 539–542.Roughgarden, J. (1974) Niche width: biogeographic patterns among Anolis lizard populations. The American Naturalist, 108 (962), 429–442.Rubio-Rocha, L. & Agudelo-Sánchez, W. (2020) Anolis mariarum Barbour, 1932. Catálogo de Anfibios y Reptiles de Colombia, 6 (1), 1–8.Sanger, T.J., Losos, J.B. & Gibson‐Brown, J.J. (2008) A developmental staging series for the lizard genus Anolis: a new system for the integration of evolution, development, and ecology. Journal of Morphology, 269 (2), 129–137.Scherrer, R., Donihue, C.M., Reynolds, R.G., Losos, J.B. & Geneva, A.J. (2022) Dewlap colour variation in Anolis sagrei is maintained among habitats within islands of the West Indies. Journal of Evolutionary Biology, 35(5), 680–692Singhal, S., Hoskin, C.J., Couper, P., Potter, S. & Moritz, C. (2018) A framework for resolving cryptic species: a case study from the lizards of the Australian wet tropics. Systematic Biology, 67 (6), 1061–1075.Smith, E.N. & Ferrari-Castro, J.A. (2008) A new species of jumping pitviper of the genus Atropoides (Serpentes: Viperidae: Crotalinae) from the Sierra de Botaderos and the Sierra La Muralla, Honduras. Zootaxa, 1948, 57−68Smith, K.L., Harmon, L.J., Shoo, L.P. & Melville, J. (2011) Evidence of constrained phenotypic evolution in a cryptic species complex of agamid lizards. Evolution, 65 (4), 976–992.Tamura, K., Stecher, G. & Kumar, S. (2021) MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution, 38 (7), 3022–3027.Thorpe, R. S., & Baez, M. (1993). Geographic variation in scalation of the lizard Gallotia stehlini within the island of Gran Canaria. Biological Journal of the Linnean Society 48,75–87.Thorpe, R.S., Surget-Groba, Y. & Johansson, H. (2008) The relative importance of ecology and geographic isolation for speciation in anoles. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1506), 3071–3081.Tollis, M., Ausubel, G., Ghimire, D. & Boissinot, S. (2012) Multilocus phylogeographic and population genetic analysis of Anolis carolinensis: historical demography of a genomic model species. PLoS ONE, 7 (6), e38474.Trifinopoulos, J., Nguyen, L.M., Haeseler, A.V. & Minh, B.Q. (2016) W-IQ-Tree: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research, 44 (1), 232–235.Uetz, P., Freed, P., Aguilar, R. & Hošek. J. (2022) The Reptile Database, http://www.reptiledatabase.org. Acceso el 28 de marzo de 2023.Vats, L.K. & Vasu, V. (1993) A comparative account to evaluate the taxonomic importance of the male reproductive organs of click beetles (Coleoptera: Elateridae). Journal of Entomological Research, 17 (4), 233–238.Velasco, J.A. & Herrel, A. (2007) Ecomorphology of Anolis lizards of the Choco′ region in Colombia and comparisons with Greater Antillean ecomorphs. Biological Journal of the Linnean Society, 92 (1), 29–39.Velasco, J.A. & Hurtado-Gómez, J.P. (2014) A new green anole lizard of the "Dactyloa" clade (Squamata: Dactyloidae) from the Magdalena River valley of Colombia. Zootaxa, 3785 (2), 201–216.Wake, D.B., Roth, G. & Wake, M.H. (1983) On the problem of stasis in organismal evolution. Journal of Theoretical Biology, 101 (2), 211–224.Wegener, J.E., Gartner, G.E. & Losos, J.B. (2014) Lizard scales in an adaptive radiation: variation in scale number follows climatic and structural habitat diversity in Anolis lizards. Biological journal of the Linnean Society, 113 (2), 570–579.Werner, F. (1916) Bemerkungen über einige niedere Wirbeltiere der Anden von Kolumbien mit Beschreibungen neuer Arten. Zoologischer Anzeiger, 47, 301–311.Wickham, H. (2016) ggplot2: Elegant Graphics for Data Analysis. Springer, New York, 213 pp.Wickham, H., François, R., Henry, L. & Müller, K. (2022) dplyr. R package. https://cran.rhub.io/web/packages/dplyr/dplyr.pdf. Acceso el 28 de marzo del 2013Wiley, E. (1978) The evolutionary species concept reconsidered. Systematic Biology, 27 (1), 17–26.Williams, E.E. (1976) South American anoles; the species groups. Papéis Avulsos de Zoologia, 29, 259–268.Williams, E.E., Rand, H., Rand, A.S. & O’Hara, R.J. (1995) A computer approach to the comparison and identification of species in difficult taxonomic groups. Breviora, 502, 1– 47.Yánez-Muñoz, M.H., Reyes-Puig, C., Reyes-Puig, J.P., Velasco, J.A., Ayala-Varela, F. & Torres-Carvajal, O. (2018) A new cryptic species of Anolis lizard from northwestern South America (Iguanidae, Dactyloinae). ZooKeys, 794, 135–163.Zaher, H. & Prudente, A.L.C. (2003) Hemipenes of Siphlophis (Serpentes, Xenodontinae) and techniques of hemipenial preparation in snakes: a response to Dowling. Herpetological Review, 34 (4),302–307.Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A. (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29 (22), 2869– 2876.info:eu-repo/semantics/openAccessinfo:eu-repo/semantics/openAccessinfo:eu-repo/semantics/openAccessinfo:eu-repo/semantics/openAccesshttp://purl.org/coar/access_right/c_abf2oai:repositorio.ucaldas.edu.co:ucaldas/196132024-07-16T21:41:32Z

Filogenia y taxonomía de tres especies de anolis (squamata: anolidae) presentes en los Andes colombianos

Publicaciones similares