pELMO, an optimised in-house cloning vector

DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB k...

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Autores:
Tipo de recurso:
Fecha de publicación:
2017
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/18824
Acceso en línea:
http://repository.urosario.edu.co/handle/10336/18824
Palabra clave:
Blunt-Ended
Ccdb Killer Gene
Cloning Vector
Pcr Cloning
Recombinant Dna Technology
Plasmid Vector
Restriction Endonuclease
Article
Bacterium Transformation
Cloning Vector
Molecular Cloning
Neospora Caninum
Nonhuman
Pelmo Vector
Plasmodium Falciparum
Plasmodium Vivax
Polymerase Chain Reaction
Process Design
Process Optimization
Protein Cleavage
Sanger Sequencing
Rights
License
Abierto (Texto completo)
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spelling 64ed3111-4a4c-4583-a875-5201cdec7cfc-17dac049d-c747-4b91-849c-c2efae4da824-14138d92d-a7e8-46a5-b415-2d76a4bb9f23-1796530656002018-12-14T13:02:55Z2018-12-14T13:02:55Z20172017DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB killer gene from the pDONR 221 plasmid, cloned into the pUC18 vector’s multiple cloning site (Thermo Scientific). The ccdB killer gene has a cleavage site (CCC/GGG) for the SmaI restriction enzyme which is used for vector linearisation and cloning blunt-ended products. pELMO transformation efficiency was evaluated with different sized inserts and its cloning efficiency was compared to that of the pGEM-T Easy commercial vector. The highest pELMO transformation efficiency was observed for ~500 bp DNA fragments; pELMO vector had higher cloning efficiency for all insert sizes tested. In-house and commercial vector cloned insert reads after sequencing were similar thus highlighting that sequencing primers were designed and localised appropriately. pELMO is thus proposed as a practical alternative for in-house cloning of PCR products in molecular biology laboratories. © 2017, The Author(s).application/pdf21910855http://repository.urosario.edu.co/handle/10336/18824engNo. 1AMB ExpressVol. 7AMB Express, ISSN: 2191-0855, Vol. 7/No. 1 (2017)https://amb-express.springeropen.com/track/pdf/10.1186/s13568-017-0324-2Abierto (Texto completo)http://creativecommons.org/licenses/by/4.0/http://purl.org/coar/access_right/c_abf2Ainsa, J.A., Martin, C., Cabeza, M., De la Cruz, F., Mendiola, M.V., Construction of a family of Mycobacterium/Escherichia coli shuttle vectors derived from pAL5000 and pACYC184: their use for cloning an antibiotic-resistance gene from Mycobacterium fortuitum (1996) Gene, 176 (1-2), pp. 23-26. , COI: 1:CAS:528:DyaK28XntVKrtbo%3D, PID: 8918226instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURBlunt-EndedCcdb Killer GeneCloning VectorPcr CloningRecombinant Dna TechnologyPlasmid VectorRestriction EndonucleaseArticleBacterium TransformationCloning VectorMolecular CloningNeospora CaninumNonhumanPelmo VectorPlasmodium FalciparumPlasmodium VivaxPolymerase Chain ReactionProcess DesignProcess OptimizationProtein CleavageSanger SequencingpELMO, an optimised in-house cloning vectorarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Ramos, Andrea E.Muñoz, MarinaMoreno‑Pérez, Darwin A.Patarroyo, Manuel A.Ramos, Andrea E.Muñoz, MarinaMoreno‑Pérez, Darwin A.Patarroyo, Manuel A.ORIGINAL6.pdfapplication/pdf1553344https://repository.urosario.edu.co/bitstreams/4f8c3122-d160-4238-9303-5d5afa2e0c10/download9104ba678a5bcb28afd0a6bcc1fd28b5MD51TEXT6.pdf.txt6.pdf.txtExtracted texttext/plain36313https://repository.urosario.edu.co/bitstreams/7a4563d9-edd1-489d-b714-4681782789f0/download5c4b751c63caad07edbe8d52a30bf5f3MD52THUMBNAIL6.pdf.jpg6.pdf.jpgGenerated Thumbnailimage/jpeg4601https://repository.urosario.edu.co/bitstreams/34fdc29e-2cbe-41bf-9b5e-f956c9965d6b/download66ff178b87da6ea59cb87fa32c1ae44eMD5310336/18824oai:repository.urosario.edu.co:10336/188242021-06-03 00:49:09.203https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv pELMO, an optimised in-house cloning vector
title pELMO, an optimised in-house cloning vector
spellingShingle pELMO, an optimised in-house cloning vector
Blunt-Ended
Ccdb Killer Gene
Cloning Vector
Pcr Cloning
Recombinant Dna Technology
Plasmid Vector
Restriction Endonuclease
Article
Bacterium Transformation
Cloning Vector
Molecular Cloning
Neospora Caninum
Nonhuman
Pelmo Vector
Plasmodium Falciparum
Plasmodium Vivax
Polymerase Chain Reaction
Process Design
Process Optimization
Protein Cleavage
Sanger Sequencing
title_short pELMO, an optimised in-house cloning vector
title_full pELMO, an optimised in-house cloning vector
title_fullStr pELMO, an optimised in-house cloning vector
title_full_unstemmed pELMO, an optimised in-house cloning vector
title_sort pELMO, an optimised in-house cloning vector
dc.subject.spa.fl_str_mv Blunt-Ended
Ccdb Killer Gene
Cloning Vector
Pcr Cloning
Recombinant Dna Technology
topic Blunt-Ended
Ccdb Killer Gene
Cloning Vector
Pcr Cloning
Recombinant Dna Technology
Plasmid Vector
Restriction Endonuclease
Article
Bacterium Transformation
Cloning Vector
Molecular Cloning
Neospora Caninum
Nonhuman
Pelmo Vector
Plasmodium Falciparum
Plasmodium Vivax
Polymerase Chain Reaction
Process Design
Process Optimization
Protein Cleavage
Sanger Sequencing
dc.subject.decs.spa.fl_str_mv Plasmid Vector
Restriction Endonuclease
Article
Bacterium Transformation
Cloning Vector
Molecular Cloning
Neospora Caninum
Nonhuman
Pelmo Vector
Plasmodium Falciparum
Plasmodium Vivax
Polymerase Chain Reaction
Process Design
Process Optimization
Protein Cleavage
Sanger Sequencing
description DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB killer gene from the pDONR 221 plasmid, cloned into the pUC18 vector’s multiple cloning site (Thermo Scientific). The ccdB killer gene has a cleavage site (CCC/GGG) for the SmaI restriction enzyme which is used for vector linearisation and cloning blunt-ended products. pELMO transformation efficiency was evaluated with different sized inserts and its cloning efficiency was compared to that of the pGEM-T Easy commercial vector. The highest pELMO transformation efficiency was observed for ~500 bp DNA fragments; pELMO vector had higher cloning efficiency for all insert sizes tested. In-house and commercial vector cloned insert reads after sequencing were similar thus highlighting that sequencing primers were designed and localised appropriately. pELMO is thus proposed as a practical alternative for in-house cloning of PCR products in molecular biology laboratories. © 2017, The Author(s).
publishDate 2017
dc.date.created.spa.fl_str_mv 2017
dc.date.issued.none.fl_str_mv 2017
dc.date.accessioned.none.fl_str_mv 2018-12-14T13:02:55Z
dc.date.available.none.fl_str_mv 2018-12-14T13:02:55Z
dc.type.eng.fl_str_mv article
dc.type.coarversion.fl_str_mv http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.coar.fl_str_mv http://purl.org/coar/resource_type/c_6501
dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.issn.none.fl_str_mv 21910855
dc.identifier.uri.none.fl_str_mv http://repository.urosario.edu.co/handle/10336/18824
identifier_str_mv 21910855
url http://repository.urosario.edu.co/handle/10336/18824
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.citationIssue.none.fl_str_mv No. 1
dc.relation.citationTitle.none.fl_str_mv AMB Express
dc.relation.citationVolume.none.fl_str_mv Vol. 7
dc.relation.ispartof.spa.fl_str_mv AMB Express, ISSN: 2191-0855, Vol. 7/No. 1 (2017)
dc.relation.uri.spa.fl_str_mv https://amb-express.springeropen.com/track/pdf/10.1186/s13568-017-0324-2
dc.rights.coar.fl_str_mv http://purl.org/coar/access_right/c_abf2
dc.rights.acceso.spa.fl_str_mv Abierto (Texto completo)
dc.rights.cc.spa.fl_str_mv http://creativecommons.org/licenses/by/4.0/
rights_invalid_str_mv Abierto (Texto completo)
http://creativecommons.org/licenses/by/4.0/
http://purl.org/coar/access_right/c_abf2
dc.format.mimetype.none.fl_str_mv application/pdf
institution Universidad del Rosario
dc.source.bibliographicCitation.spa.fl_str_mv Ainsa, J.A., Martin, C., Cabeza, M., De la Cruz, F., Mendiola, M.V., Construction of a family of Mycobacterium/Escherichia coli shuttle vectors derived from pAL5000 and pACYC184: their use for cloning an antibiotic-resistance gene from Mycobacterium fortuitum (1996) Gene, 176 (1-2), pp. 23-26. , COI: 1:CAS:528:DyaK28XntVKrtbo%3D, PID: 8918226
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dc.source.reponame.none.fl_str_mv reponame:Repositorio Institucional EdocUR
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