pELMO, an optimised in-house cloning vector
DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB k...
- Autores:
- Tipo de recurso:
- Fecha de publicación:
- 2017
- Institución:
- Universidad del Rosario
- Repositorio:
- Repositorio EdocUR - U. Rosario
- Idioma:
- eng
- OAI Identifier:
- oai:repository.urosario.edu.co:10336/18824
- Acceso en línea:
- http://repository.urosario.edu.co/handle/10336/18824
- Palabra clave:
- Blunt-Ended
Ccdb Killer Gene
Cloning Vector
Pcr Cloning
Recombinant Dna Technology
Plasmid Vector
Restriction Endonuclease
Article
Bacterium Transformation
Cloning Vector
Molecular Cloning
Neospora Caninum
Nonhuman
Pelmo Vector
Plasmodium Falciparum
Plasmodium Vivax
Polymerase Chain Reaction
Process Design
Process Optimization
Protein Cleavage
Sanger Sequencing
- Rights
- License
- Abierto (Texto completo)
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64ed3111-4a4c-4583-a875-5201cdec7cfc-17dac049d-c747-4b91-849c-c2efae4da824-14138d92d-a7e8-46a5-b415-2d76a4bb9f23-1796530656002018-12-14T13:02:55Z2018-12-14T13:02:55Z20172017DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB killer gene from the pDONR 221 plasmid, cloned into the pUC18 vector’s multiple cloning site (Thermo Scientific). The ccdB killer gene has a cleavage site (CCC/GGG) for the SmaI restriction enzyme which is used for vector linearisation and cloning blunt-ended products. pELMO transformation efficiency was evaluated with different sized inserts and its cloning efficiency was compared to that of the pGEM-T Easy commercial vector. The highest pELMO transformation efficiency was observed for ~500 bp DNA fragments; pELMO vector had higher cloning efficiency for all insert sizes tested. In-house and commercial vector cloned insert reads after sequencing were similar thus highlighting that sequencing primers were designed and localised appropriately. pELMO is thus proposed as a practical alternative for in-house cloning of PCR products in molecular biology laboratories. © 2017, The Author(s).application/pdf21910855http://repository.urosario.edu.co/handle/10336/18824engNo. 1AMB ExpressVol. 7AMB Express, ISSN: 2191-0855, Vol. 7/No. 1 (2017)https://amb-express.springeropen.com/track/pdf/10.1186/s13568-017-0324-2Abierto (Texto completo)http://creativecommons.org/licenses/by/4.0/http://purl.org/coar/access_right/c_abf2Ainsa, J.A., Martin, C., Cabeza, M., De la Cruz, F., Mendiola, M.V., Construction of a family of Mycobacterium/Escherichia coli shuttle vectors derived from pAL5000 and pACYC184: their use for cloning an antibiotic-resistance gene from Mycobacterium fortuitum (1996) Gene, 176 (1-2), pp. 23-26. , COI: 1:CAS:528:DyaK28XntVKrtbo%3D, PID: 8918226instname:Universidad del Rosarioreponame:Repositorio Institucional EdocURBlunt-EndedCcdb Killer GeneCloning VectorPcr CloningRecombinant Dna TechnologyPlasmid VectorRestriction EndonucleaseArticleBacterium TransformationCloning VectorMolecular CloningNeospora CaninumNonhumanPelmo VectorPlasmodium FalciparumPlasmodium VivaxPolymerase Chain ReactionProcess DesignProcess OptimizationProtein CleavageSanger SequencingpELMO, an optimised in-house cloning vectorarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Ramos, Andrea E.Muñoz, MarinaMoreno‑Pérez, Darwin A.Patarroyo, Manuel A.Ramos, Andrea E.Muñoz, MarinaMoreno‑Pérez, Darwin A.Patarroyo, Manuel A.ORIGINAL6.pdfapplication/pdf1553344https://repository.urosario.edu.co/bitstreams/4f8c3122-d160-4238-9303-5d5afa2e0c10/download9104ba678a5bcb28afd0a6bcc1fd28b5MD51TEXT6.pdf.txt6.pdf.txtExtracted texttext/plain36313https://repository.urosario.edu.co/bitstreams/7a4563d9-edd1-489d-b714-4681782789f0/download5c4b751c63caad07edbe8d52a30bf5f3MD52THUMBNAIL6.pdf.jpg6.pdf.jpgGenerated Thumbnailimage/jpeg4601https://repository.urosario.edu.co/bitstreams/34fdc29e-2cbe-41bf-9b5e-f956c9965d6b/download66ff178b87da6ea59cb87fa32c1ae44eMD5310336/18824oai:repository.urosario.edu.co:10336/188242021-06-03 00:49:09.203https://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co |
dc.title.spa.fl_str_mv |
pELMO, an optimised in-house cloning vector |
title |
pELMO, an optimised in-house cloning vector |
spellingShingle |
pELMO, an optimised in-house cloning vector Blunt-Ended Ccdb Killer Gene Cloning Vector Pcr Cloning Recombinant Dna Technology Plasmid Vector Restriction Endonuclease Article Bacterium Transformation Cloning Vector Molecular Cloning Neospora Caninum Nonhuman Pelmo Vector Plasmodium Falciparum Plasmodium Vivax Polymerase Chain Reaction Process Design Process Optimization Protein Cleavage Sanger Sequencing |
title_short |
pELMO, an optimised in-house cloning vector |
title_full |
pELMO, an optimised in-house cloning vector |
title_fullStr |
pELMO, an optimised in-house cloning vector |
title_full_unstemmed |
pELMO, an optimised in-house cloning vector |
title_sort |
pELMO, an optimised in-house cloning vector |
dc.subject.spa.fl_str_mv |
Blunt-Ended Ccdb Killer Gene Cloning Vector Pcr Cloning Recombinant Dna Technology |
topic |
Blunt-Ended Ccdb Killer Gene Cloning Vector Pcr Cloning Recombinant Dna Technology Plasmid Vector Restriction Endonuclease Article Bacterium Transformation Cloning Vector Molecular Cloning Neospora Caninum Nonhuman Pelmo Vector Plasmodium Falciparum Plasmodium Vivax Polymerase Chain Reaction Process Design Process Optimization Protein Cleavage Sanger Sequencing |
dc.subject.decs.spa.fl_str_mv |
Plasmid Vector Restriction Endonuclease Article Bacterium Transformation Cloning Vector Molecular Cloning Neospora Caninum Nonhuman Pelmo Vector Plasmodium Falciparum Plasmodium Vivax Polymerase Chain Reaction Process Design Process Optimization Protein Cleavage Sanger Sequencing |
description |
DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB killer gene from the pDONR 221 plasmid, cloned into the pUC18 vector’s multiple cloning site (Thermo Scientific). The ccdB killer gene has a cleavage site (CCC/GGG) for the SmaI restriction enzyme which is used for vector linearisation and cloning blunt-ended products. pELMO transformation efficiency was evaluated with different sized inserts and its cloning efficiency was compared to that of the pGEM-T Easy commercial vector. The highest pELMO transformation efficiency was observed for ~500 bp DNA fragments; pELMO vector had higher cloning efficiency for all insert sizes tested. In-house and commercial vector cloned insert reads after sequencing were similar thus highlighting that sequencing primers were designed and localised appropriately. pELMO is thus proposed as a practical alternative for in-house cloning of PCR products in molecular biology laboratories. © 2017, The Author(s). |
publishDate |
2017 |
dc.date.created.spa.fl_str_mv |
2017 |
dc.date.issued.none.fl_str_mv |
2017 |
dc.date.accessioned.none.fl_str_mv |
2018-12-14T13:02:55Z |
dc.date.available.none.fl_str_mv |
2018-12-14T13:02:55Z |
dc.type.eng.fl_str_mv |
article |
dc.type.coarversion.fl_str_mv |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
dc.type.coar.fl_str_mv |
http://purl.org/coar/resource_type/c_6501 |
dc.type.spa.spa.fl_str_mv |
Artículo |
dc.identifier.issn.none.fl_str_mv |
21910855 |
dc.identifier.uri.none.fl_str_mv |
http://repository.urosario.edu.co/handle/10336/18824 |
identifier_str_mv |
21910855 |
url |
http://repository.urosario.edu.co/handle/10336/18824 |
dc.language.iso.spa.fl_str_mv |
eng |
language |
eng |
dc.relation.citationIssue.none.fl_str_mv |
No. 1 |
dc.relation.citationTitle.none.fl_str_mv |
AMB Express |
dc.relation.citationVolume.none.fl_str_mv |
Vol. 7 |
dc.relation.ispartof.spa.fl_str_mv |
AMB Express, ISSN: 2191-0855, Vol. 7/No. 1 (2017) |
dc.relation.uri.spa.fl_str_mv |
https://amb-express.springeropen.com/track/pdf/10.1186/s13568-017-0324-2 |
dc.rights.coar.fl_str_mv |
http://purl.org/coar/access_right/c_abf2 |
dc.rights.acceso.spa.fl_str_mv |
Abierto (Texto completo) |
dc.rights.cc.spa.fl_str_mv |
http://creativecommons.org/licenses/by/4.0/ |
rights_invalid_str_mv |
Abierto (Texto completo) http://creativecommons.org/licenses/by/4.0/ http://purl.org/coar/access_right/c_abf2 |
dc.format.mimetype.none.fl_str_mv |
application/pdf |
institution |
Universidad del Rosario |
dc.source.bibliographicCitation.spa.fl_str_mv |
Ainsa, J.A., Martin, C., Cabeza, M., De la Cruz, F., Mendiola, M.V., Construction of a family of Mycobacterium/Escherichia coli shuttle vectors derived from pAL5000 and pACYC184: their use for cloning an antibiotic-resistance gene from Mycobacterium fortuitum (1996) Gene, 176 (1-2), pp. 23-26. , COI: 1:CAS:528:DyaK28XntVKrtbo%3D, PID: 8918226 |
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reponame:Repositorio Institucional EdocUR |
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