KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems

Context: The electron localization is a concept that allows scientists to better understand the physical and chemical properties of electronic systems. It is associated with the propensity of electron pairs with opposite spins to accumulate as well as with their response to external perturbations. T...

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Tipo de recurso:
Fecha de publicación:
2024
Institución:
Universidad del Rosario
Repositorio:
Repositorio EdocUR - U. Rosario
Idioma:
eng
OAI Identifier:
oai:repository.urosario.edu.co:10336/44816
Acceso en línea:
https://doi.org/10.1007/s00894-024-06070-4
https://repository.urosario.edu.co/handle/10336/44816
Palabra clave:
Catalysis
Computer Science Applications
Physical and Theoretical Chemistry
Organic Chemistry
Inorganic Chemistry
Computational Theory
Mathematics
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Attribution-NonCommercial-NoDerivatives 4.0 International
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spelling 7155a0fb-de40-4f6b-8931-0f7ee2abeb4691a0d99f-91c1-42a8-8dfe-4209e3b78897a01542e5-2327-467d-91ac-be9f0575e7dd5574323f-1951-49ab-804c-0a63a4d508c6c6ce8769-b3a2-497a-967c-10427c17c73b20b88eb1-cf4b-46e9-8e09-89d8037f4b102025-01-26T18:31:33Z2025-01-26T18:31:33Z2024-08-012024-08-01Context: The electron localization is a concept that allows scientists to better understand the physical and chemical properties of electronic systems. It is associated with the propensity of electron pairs with opposite spins to accumulate as well as with their response to external perturbations. This paper contains a detailed description of the design and implementation of the program KLD, which was primarily developed in our research group to elucidate electron localization in molecular systems by evaluating the information content of electron-pair density functions. KLD employs two information-based functions as a real space measure of the Fermi and Coulomb holes for same-spin electrons and shows a better resolution as compared to other methods (i.e., ELF). Information about the acceleration of the code is also included in the present work, being noticeable the reduction of wall-time calculation and the error calculation between versions. Methods: KLD was designed to be easy to use, extend, and maintainthus, many principles of modern software development, extensive testing, and package management were adopted. The latest version of the KLD program was created utilizing the Compute Unified Device Architecture (CUDA) version, which allows it to use the computational capacity of NVIDIA Graphics Processing Units (GPUs) for processing purposes. The electron-pair conditional density was calculated from the canonical molecular orbitals obtained at the HF/6-31G(2df,p) level, or alternatively the natural orbitals in the case of explicit correlated wavefunctions computed at the MP2/6-31G(2df,p)//HF/6-31G(2df,p) level.application/pdfhttps://doi.org/10.1007/s00894-024-06070-4https://repository.urosario.edu.co/handle/10336/44816engJournal of Molecular ModelingJournal of Molecular ModelingAttribution-NonCommercial-NoDerivatives 4.0 InternationalAbierto (Texto Completo)http://creativecommons.org/licenses/by-nc-sa/4.0/http://purl.org/coar/access_right/c_abf2Journal of Molecular Modelinginstname:Universidad del Rosarioreponame:Repositorio Institucional EdocURCatalysisComputer Science ApplicationsPhysical and Theoretical ChemistryOrganic ChemistryInorganic ChemistryComputational TheoryMathematicsKLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systemsarticleArtículohttp://purl.org/coar/version/c_970fb48d4fbd8a85http://purl.org/coar/resource_type/c_6501Bedoya, ValeriaRodríguez, VladimirRincón, LuisZambrano, CesarSeijas, LuisTorres, F. JavierORIGINALKLD_a_program_to_elucidate_the_localization_of_the_Fermi_and_Coulomb_holes_in_molecular_systems.pdfapplication/pdf2778191https://repository.urosario.edu.co/bitstreams/f2662288-16a4-4312-8c1f-e33d4ceb1a30/downloadd01310ccd9293b2fa04699e4533f9bc7MD51TEXTKLD_a_program_to_elucidate_the_localization_of_the_Fermi_and_Coulomb_holes_in_molecular_systems.pdf.txtKLD_a_program_to_elucidate_the_localization_of_the_Fermi_and_Coulomb_holes_in_molecular_systems.pdf.txtExtracted texttext/plain75097https://repository.urosario.edu.co/bitstreams/89ce751b-8635-42e4-926d-9408419db904/downloadd8a4ece199d535327ee73a322d4b6a98MD52THUMBNAILKLD_a_program_to_elucidate_the_localization_of_the_Fermi_and_Coulomb_holes_in_molecular_systems.pdf.jpgKLD_a_program_to_elucidate_the_localization_of_the_Fermi_and_Coulomb_holes_in_molecular_systems.pdf.jpgGenerated Thumbnailimage/jpeg4734https://repository.urosario.edu.co/bitstreams/6be0cf9d-c4a0-4651-b160-913effea3c79/downloadc0b7c7f11866cf60accd32321b21d8feMD5310336/44816oai:repository.urosario.edu.co:10336/448162025-01-27 03:05:32.514http://creativecommons.org/licenses/by-nc-sa/4.0/Attribution-NonCommercial-NoDerivatives 4.0 Internationalhttps://repository.urosario.edu.coRepositorio institucional EdocURedocur@urosario.edu.co
dc.title.spa.fl_str_mv KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
title KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
spellingShingle KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
Catalysis
Computer Science Applications
Physical and Theoretical Chemistry
Organic Chemistry
Inorganic Chemistry
Computational Theory
Mathematics
title_short KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
title_full KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
title_fullStr KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
title_full_unstemmed KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
title_sort KLD: a program to elucidate the localization of the Fermi and Coulomb holes in molecular systems
dc.subject.spa.fl_str_mv Catalysis
Computer Science Applications
Physical and Theoretical Chemistry
Organic Chemistry
Inorganic Chemistry
Computational Theory
Mathematics
topic Catalysis
Computer Science Applications
Physical and Theoretical Chemistry
Organic Chemistry
Inorganic Chemistry
Computational Theory
Mathematics
description Context: The electron localization is a concept that allows scientists to better understand the physical and chemical properties of electronic systems. It is associated with the propensity of electron pairs with opposite spins to accumulate as well as with their response to external perturbations. This paper contains a detailed description of the design and implementation of the program KLD, which was primarily developed in our research group to elucidate electron localization in molecular systems by evaluating the information content of electron-pair density functions. KLD employs two information-based functions as a real space measure of the Fermi and Coulomb holes for same-spin electrons and shows a better resolution as compared to other methods (i.e., ELF). Information about the acceleration of the code is also included in the present work, being noticeable the reduction of wall-time calculation and the error calculation between versions. Methods: KLD was designed to be easy to use, extend, and maintain
publishDate 2024
dc.date.created.spa.fl_str_mv 2024-08-01
dc.date.issued.spa.fl_str_mv 2024-08-01
dc.date.accessioned.none.fl_str_mv 2025-01-26T18:31:33Z
dc.date.available.none.fl_str_mv 2025-01-26T18:31:33Z
dc.type.spa.fl_str_mv article
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dc.type.spa.spa.fl_str_mv Artículo
dc.identifier.doi.spa.fl_str_mv https://doi.org/10.1007/s00894-024-06070-4
dc.identifier.uri.none.fl_str_mv https://repository.urosario.edu.co/handle/10336/44816
url https://doi.org/10.1007/s00894-024-06070-4
https://repository.urosario.edu.co/handle/10336/44816
dc.language.iso.spa.fl_str_mv eng
language eng
dc.relation.ispartof.spa.fl_str_mv Journal of Molecular Modeling
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dc.rights.acceso.spa.fl_str_mv Abierto (Texto Completo)
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rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
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http://purl.org/coar/access_right/c_abf2
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